BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2607.p (598 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981014|ref|YP_001353510.1| two-component regulatory protei... 84 2e-17 gi|152982741|ref|YP_001352306.1| hybrid two-components system re... 81 2e-16 gi|152982458|ref|YP_001353582.1| sensor histidine kinase/respons... 77 3e-15 gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/re... 76 5e-15 gi|152982481|ref|YP_001353348.1| signal transduction histidine k... 70 3e-13 >gi|152981014|ref|YP_001353510.1| two-component regulatory protein sensor kinase for high-affinity potassium transport system [Janthinobacterium sp. Marseille] Length = 908 Score = 84.0 bits (206), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/222 (29%), Positives = 103/222 (46%), Gaps = 14/222 (6%) Query: 369 SFSYSVSHDLRAPLRAISGYAMILEEDYAQAIDDKGREQLQVIRRNVRKMDALINDLLKL 428 S ++SHDLR PL A+ G + L + + +E + +M L+ +LL + Sbjct: 673 SLLAAISHDLRTPLTALVGLSESLTRSKPE-LAAAQQELAHALHEEALRMGNLVTNLLDM 731 Query: 429 AKSTTGE--LTLQRFSMDELVG------QVIAGLRQENPGVAFEVPHLEGAVANRGLIAQ 480 A+ +GE L LQ +E+VG Q + G Q + +A P L + LI + Sbjct: 732 ARIQSGEVKLNLQWQQFEEVVGSSLRAVQSLLGRHQVHTRLA---PGLPLVNFDAVLIER 788 Query: 481 VWENLLANAVKFSSKSEQPLVRVSMEVSADEYIYGVHDNGVGFDMRYAHKLFGTFQRLHR 540 V NLL NA K++ Q + ++ E+S V+DNG G +F F R R Sbjct: 789 VLCNLLENASKYTPAGSQ--ITIAAELSGQYLDVAVYDNGPGLPPGQEEAIFEKFTRGER 846 Query: 541 QEEYAGTGIGLALVQRIVIRHSGRVWAESQPKQGASFYFALP 582 + G G+GLA+ + I+ H G + P+ GA+ F LP Sbjct: 847 ESATPGVGLGLAICRAIIEAHHGTIRGGHSPQGGAAIIFTLP 888 >gi|152982741|ref|YP_001352306.1| hybrid two-components system response regulator and sensor kinase [Janthinobacterium sp. Marseille] Length = 948 Score = 81.3 bits (199), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 130/276 (47%), Gaps = 23/276 (8%) Query: 314 VNATAIPSRDQRKLISRTVIYDISERKRAEEEIEALNADLERQAQHLHSVNKELESFSYS 373 V+ T P+R + + + V DI+ K+ E + L A L H N F + Sbjct: 428 VHLTLAPTRYRGEEVLLCVFMDITAHKQIHESL--LKAKL-----HADDANTAKTLFLTT 480 Query: 374 VSHDLRAPLRAISGYAMILEEDYAQAIDDKGREQLQVIRRNVRKMDALINDLLKLAKSTT 433 +SH+LR PL + G LE A+ D+ R L ++++ + ++ L +A+ Sbjct: 481 MSHELRTPLHGLLG---ALELFSLTAVTDQQRMYLHAMQQSSSILLKTVSQTLDIARIEA 537 Query: 434 G--ELTLQRFSMDELVGQVIAGL-----RQENPGVAFEVPHL-EGAVANRGLIAQVWENL 485 G EL FS L+ +VIA R+ P + E V + I Q+ NL Sbjct: 538 GAFELETTAFSSLALLEEVIAAYAAPAERKALCICGVPDPAIPELLVGDVTRIKQILNNL 597 Query: 486 LANAVKFSSKSEQPLVR---VSMEVSADEYIYGVHDNGVGFDMRYAHKLFGTFQRLHRQE 542 ++NA+KF+ S Q ++R +++E + V D+G G D + ++F F ++ + Sbjct: 598 MSNAIKFTD-SGQVVLRSRLLNLEHGMATIVLQVEDSGRGIDQVHLGRIFEPFYQVEQNA 656 Query: 543 EY-AGTGIGLALVQRIVIRHSGRVWAESQPKQGASF 577 + +GTG+GL++ +R G +WA S+P G SF Sbjct: 657 QLKSGTGLGLSICRRFAQMMGGTIWAMSEPGSGTSF 692 >gi|152982458|ref|YP_001353582.1| sensor histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 1096 Score = 77.0 bits (188), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 71/260 (27%), Positives = 130/260 (50%), Gaps = 26/260 (10%) Query: 344 EEIEA---LNADLERQAQHLHSVNKELESFSYSVSHDLRAPLRAISGYAMILEEDYAQAI 400 +EI+A +A L+ + S N+ + +SH+LR+PL +I GY+ IL ++ + + Sbjct: 621 QEIDAHQRTDAALQSAKEAAESANQAKTRYVAGISHELRSPLNSILGYSQILLKN--EQL 678 Query: 401 DDKGREQLQVIRRNVRKMDALINDLLKLAKSTTGELTLQR----FS--MDELVGQV---- 450 D R +Q I+R+ + L+++LL LA+ + L+ F+ +D+L+ V Sbjct: 679 DAAPRTAIQTIQRSGEHLLGLVDELLDLARIEADRMRLEPAPILFAAFIDDLLSMVRPQA 738 Query: 451 -IAGLR-QENPGVAFEVPHLEGAVANRGLIAQVWENLLANAVKFSSKSEQPLVRVSMEVS 508 GLR Q G ++PH A R + Q+ NLL NA++F+ V + +E + Sbjct: 739 EAKGLRLQYTHG--GDLPHYVLADGKR--LRQILINLLTNALRFTDTGS---VTLHVECT 791 Query: 509 ADEYIYGVHDNGVGFDMRYAHKLFGTFQR--LHRQEEYAGTGIGLALVQRIVIRHSGRVW 566 + V D G+G ++ ++F F+R R G G+GLA+ +++++ +G + Sbjct: 792 GVSMRFDVIDTGIGIAVQDRQRIFQPFERGAAGRLRGEPGAGLGLAITEKLILMMNGSLN 851 Query: 567 AESQPKQGASFYFALPRKHV 586 S QG++F LP + Sbjct: 852 LISTQGQGSTFVVRLPLMEI 871 >gi|152982169|ref|YP_001352554.1| sensory box histidine kinase/response regulator [Janthinobacterium sp. Marseille] Length = 702 Score = 76.3 bits (186), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 67/271 (24%), Positives = 124/271 (45%), Gaps = 35/271 (12%) Query: 328 ISRTVIYDISERKRAEEEIEALNADLERQAQHLHSVNKELESFSYSVSHDLRAPLRAISG 387 +SR + + + ER R DL S N+ F +SH++R P+ + G Sbjct: 303 LSRNLEHQVVERTR----------DLSIAKDEAESANRAKSEFLAVMSHEIRTPMNGMLG 352 Query: 388 YAMILEEDYAQAIDDKGREQLQVIRRNVRKMDALINDLLKLAKSTTGELTLQ--RF---- 441 +++ A+ D RE L+ + + + +++ND+L +K +G L + +F Sbjct: 353 ---MMQLALAETSDRTQREHLETAQYSAEALLSILNDILDFSKLESGNLQFEAAQFDLLK 409 Query: 442 SMDELVGQVIA-------GLRQENPGVAFEVPHLEGAVANRGLIAQVWENLLANAVKFSS 494 +MD ++ + + L E P E+P + ANR + QV NL+ NA+KF+ Sbjct: 410 TMDSVINLMASRSCDASLALAVECPA---EIPRMLVGDANR--LRQVLLNLINNALKFTE 464 Query: 495 KSEQPLVRVSMEVSADE--YIYGVHDNGVGFDMRYAHKLFGTFQRLHRQ--EEYAGTGIG 550 + L + ++A + + V D+G+G +LF F + + GTG+G Sbjct: 465 QGGVTLKVALLNLNAGQARMRFSVIDSGIGIAPEAQARLFQAFSQADNSISRRFGGTGLG 524 Query: 551 LALVQRIVIRHSGRVWAESQPKQGASFYFAL 581 L++ ++IV G + S +G+ F+F L Sbjct: 525 LSICKKIVDMQGGSIGVHSAEGKGSEFWFEL 555 >gi|152982481|ref|YP_001353348.1| signal transduction histidine kinase [Janthinobacterium sp. Marseille] Length = 459 Score = 70.5 bits (171), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 67/244 (27%), Positives = 116/244 (47%), Gaps = 23/244 (9%) Query: 352 DLERQAQHLHSVNKELESFSYSVSHDLRAPLRAISGYAMILEE-DYAQAIDDKGREQLQV 410 D++ +A+ S N E F ++H+LR PL I+ A +L + A + K + Sbjct: 85 DMQAKAE---SANHRQEEFLSMLAHELRNPLAPIAMAADLLGKISTAHPLLPKLH---GI 138 Query: 411 IRRNVRKMDALINDLLKLAKSTTGELTLQRFSMDELVGQVI-AGLRQENPGVAFEVPHLE 469 I R V M L++DL+ ++ +TG +TLQ+ S+ L+ ++I + + P + L Sbjct: 139 ISRQVSHMAHLVDDLVDASRVSTGNITLQKRSL--LLAEIIESAVETSQPFIDKRTQQLT 196 Query: 470 GAVANRGLI--------AQVWENLLANAVKFSSKSEQPLVRVSMEVSADEYIYGVHDNGV 521 ++ + +I AQ + NL+ NA KF+ + V ++ S + + + D+GV Sbjct: 197 ISMPDASIIIHGDLVRLAQAFANLIINATKFTPVDGHIDILVQLQTSTVKVV--IKDDGV 254 Query: 522 GFDMRYAHKLFGTFQR--LHRQEEYAGTGIGLALVQRIVIRHSGRVWAESQPKQ-GASFY 578 G +F F++ L G GIGL+LV+ +V H+G V S G+ F Sbjct: 255 GIAADIQPYIFELFRQGPLSLDRSQGGLGIGLSLVRTVVEMHTGTVSVYSAGADLGSEFT 314 Query: 579 FALP 582 LP Sbjct: 315 VELP 318 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.134 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,195,215 Number of extensions: 45897 Number of successful extensions: 233 Number of sequences better than 1.0e-08: 17 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 17 Length of query: 598 Length of database: 1,221,021 Length adjustment: 89 Effective length of query: 509 Effective length of database: 891,988 Effective search space: 454021892 Effective search space used: 454021892 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)