BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2605.p
         (442 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligas...    79   6e-16

>gi|152980122|ref|YP_001351965.1| long-chain fatty-acid-CoA ligase
           [Janthinobacterium sp. Marseille]
          Length = 560

 Score = 78.6 bits (192), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 52/165 (31%), Positives = 81/165 (49%), Gaps = 13/165 (7%)

Query: 143 SRLRVAYTGGEAIGPDLFDFYRSL-GINLKQLYGMTETCVTVCMQPSGDVKLD-SVGRPM 200
           S L++   GG A+   + D +R + G  + + YG++ET  T    P    +   ++G P+
Sbjct: 328 SELKLCNGGGMAVQKVVNDKWREVTGCAICEGYGLSETSPTATANPPTTNEFTGTIGLPV 387

Query: 201 KGVEVRI---DAN-------GEVLVRSPGLMKEYFKRPDATAEAIDQDGYFHTGDAGFFD 250
              E++I   D N       GE+ +R P +M  Y+  P  TA+++  DG+F TGD G  D
Sbjct: 388 SSTELKIIDSDDNEVPHGSAGEIAIRGPQVMAGYWNNPVETAQSMTADGFFKTGDIGIMD 447

Query: 251 SDGHLKIIDRAKDVGKMASGSMFAPKYIENKLKFFPFIKEAVTFG 295
             G  KI+DR KD+  + SG    P  IE  +   P + E    G
Sbjct: 448 ERGFTKIVDRKKDM-ILVSGFNVYPSEIEGVVAAHPGVLECACIG 491


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.140    0.421 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,062,377
Number of extensions: 45793
Number of successful extensions: 93
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 1
Length of query: 442
Length of database: 1,221,021
Length adjustment: 86
Effective length of query: 356
Effective length of database: 903,079
Effective search space: 321496124
Effective search space used: 321496124
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)