BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2604.p (293 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 225 2e-60 gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino a... 190 1e-49 gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino a... 173 1e-44 gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino a... 142 3e-35 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 133 1e-32 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 225 bits (574), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 110/254 (43%), Positives = 161/254 (63%), Gaps = 1/254 (0%) Query: 40 EVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGQI 99 ++IL++ +S FGG++AL+D++ + + +I +IGPNGAGK++ NVI G+Y G Sbjct: 4 QIILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSF 63 Query: 100 LYRGQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGA 159 G+P P +A+ GIARTFQNI LF MT L+N+M GR+ + GL A Sbjct: 64 ELAGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKA 123 Query: 160 ARNEEIAHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMA 219 AR EE R++ E+++F+ I + L YG Q+R+E+ARALA +P +L LDEP A Sbjct: 124 ARREEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAA 183 Query: 220 GMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEVM 279 GMN EK + ++ + + G TI+LIEHD+ ++M + DR+ VLDYGK I +G P +V Sbjct: 184 GMNATEKLGLRELLVKIKAE-GKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQ 242 Query: 280 NNPEVIKAYLGTSH 293 +P VI+AYLG SH Sbjct: 243 KDPAVIEAYLGGSH 256 >gi|152980619|ref|YP_001352471.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 264 Score = 190 bits (482), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 98/249 (39%), Positives = 151/249 (60%), Gaps = 1/249 (0%) Query: 43 LDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGQILYR 102 L+LQ +++ G+ A+ + SF V +I ++IGPNGAGK++ NVI+G P G++ Sbjct: 10 LELQGVTMRIAGLTAVDNASFIVPAGKIVSLIGPNGAGKTTTYNVISGYMKPTSGRVKLF 69 Query: 103 GQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARN 162 G GM P I++ G+ R+FQ ++F TV +NI+T + K + G+L + R Sbjct: 70 GHDITGMAPEQISQLGLVRSFQRTSIFSACTVAENILTALHLKGQCGVLQALLRTQKFRR 129 Query: 163 EEIAHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMN 222 EE R + +++ FL + T L YG Q+ + + ALAA+P +LLLDEP AG+N Sbjct: 130 EEADLRTQANDLLAFLGLSARANTLASNLSYGEQRLLGVGLALAAKPKVLLLDEPAAGLN 189 Query: 223 VEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEVMNNP 282 E + + + Q G T++L+EHDM +VM ISD +VVL+YG+ I G+P E+ N+P Sbjct: 190 PSETEAFKEMVRRIG-QSGVTVLLVEHDMHMVMSISDHIVVLNYGRLIATGSPSEIQNDP 248 Query: 283 EVIKAYLGT 291 EVI+AYLG+ Sbjct: 249 EVIRAYLGS 257 >gi|152982550|ref|YP_001352349.1| ABC-type branched-chain amino acid transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 274 Score = 173 bits (438), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 101/256 (39%), Positives = 151/256 (58%), Gaps = 3/256 (1%) Query: 38 IGEVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG 97 IG ++ + ++++ FGG+ AL ++ + E E+ ++GPNG+GK++ NV+ G+Y G Sbjct: 16 IGGKLVGVTDLTMRFGGLTALDQLNMQINEGEVLGLLGPNGSGKTTFFNVLTGLYKATSG 75 Query: 98 QILYRGQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWW 157 I+Y+GQ +G P I R G+ARTFQ L +TV DNI+ G M GL N Sbjct: 76 SIIYKGQEVIGQTPQEIYRSGVARTFQRSRLSLPLTVFDNIVIGDYQHMNHGLFFNLFQR 135 Query: 158 GAARNEEIAHRRKVEEVIDFLEIQHIRKT--PVGRLPYGLQKRVELARALAAEPHMLLLD 215 A R E A+ KVE +++ + + PVG ++R+E+ RAL ++P +LLLD Sbjct: 136 KAFRAEYDAYVGKVEALLNIFSPPLVARMFEPVGTFTMIDRRRIEVCRALLSQPRLLLLD 195 Query: 216 EPMAGMNVEEKQDMCRFILDVNDQF-GTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGT 274 EP AGM +E + + IL V + TIVLIEH+M V+ I+DR +V +YGKKI +GT Sbjct: 196 EPSAGMTHDETEALMDDILQVRGKLENLTIVLIEHEMNVIERITDRCIVFNYGKKIAEGT 255 Query: 275 PDEVMNNPEVIKAYLG 290 E+ +P V AYLG Sbjct: 256 YAEITADPNVQTAYLG 271 >gi|152979977|ref|YP_001353242.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 251 Score = 142 bits (357), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 83/254 (32%), Positives = 137/254 (53%), Gaps = 7/254 (2%) Query: 38 IGEVILDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKG 97 + ++ L+L+ + FG + + S + + + A+IGPNGAGKS++ N+I+G + G Sbjct: 1 MSQLALELREVRKRFGNAEIICGASLQLPQGQRLALIGPNGAGKSTLFNLISGRFPLSSG 60 Query: 98 QILYRGQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWW 157 IL G G P I R+G++R+FQ +F ++V +N+ R + S + W Sbjct: 61 DILLNGSSIAGQKPYQINRRGLSRSFQITNIFHRLSVFENL---RCAVLWSLGYRYSFWQ 117 Query: 158 GAARNEEIAHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEP 217 +++ R E+V++ + + R L Y Q+ +E+ +A +LLLDEP Sbjct: 118 RLNGLQDVNQR--AEQVMEEIGLHKRRNVEADLLSYAEQRALEIGITIAGGAQVLLLDEP 175 Query: 218 MAGMNVEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDE 277 AGM+ E I ++ G T++++EHDM VV ++DR+ VL YG+ I TPD Sbjct: 176 TAGMSRSESDAAVELIRKISA--GKTLLMVEHDMDVVFGLADRIAVLVYGEIIACDTPDN 233 Query: 278 VMNNPEVIKAYLGT 291 + NNP V +AYLGT Sbjct: 234 IRNNPLVQQAYLGT 247 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 133 bits (335), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 73/251 (29%), Positives = 136/251 (54%), Gaps = 16/251 (6%) Query: 43 LDLQNISLSFGGVKALTDISFDVREHEIRAIIGPNGAGKSSMINVINGVYHPQKGQILYR 102 ++++NI FG AL ++S D E+ A++GP+G GK++++ +I G+ P GQ+L Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 103 GQPRLGMHPSSIARQGIARTFQNIALFKGMTVLDNIMTGRNTKMRSGLLSNAMWWGAARN 162 G+ H + + + FQ+ ALFK MTV +NI G + A R Sbjct: 63 GEDASARH---VRERQVGFVFQHYALFKHMTVFENIAFGLRVRP-----------AATRP 108 Query: 163 EEIAHRRKVEEVIDFLEIQHIRKTPVGRLPYGLQKRVELARALAAEPHMLLLDEPMAGMN 222 E + KV ++++ +++ + +L G ++R+ LARALA EP +LLLDEP ++ Sbjct: 109 SESQIKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALD 168 Query: 223 VEEKQDMCRFILDVNDQFGTTIVLIEHDMGVVMDISDRVVVLDYGKKIGDGTPDEVMNNP 282 + ++++ R++ ++D T + + HD ++++D++V+++ G G P +V NNP Sbjct: 169 AKVRKELRRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNP 228 Query: 283 E--VIKAYLGT 291 + +LG Sbjct: 229 ASPFVYGFLGN 239 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 706,079 Number of extensions: 30470 Number of successful extensions: 283 Number of sequences better than 1.0e-08: 59 Number of HSP's gapped: 211 Number of HSP's successfully gapped: 61 Length of query: 293 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 211 Effective length of database: 917,867 Effective search space: 193669937 Effective search space used: 193669937 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)