BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2602.p (358 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino a... 108 4e-25 gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino a... 93 2e-20 gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino a... 82 4e-17 gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino a... 79 6e-16 gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino a... 71 1e-13 >gi|152980782|ref|YP_001354237.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 404 Score = 108 bits (271), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 101/347 (29%), Positives = 167/347 (48%), Gaps = 57/347 (16%) Query: 57 LVFALAALGLNVLTGYAGQLSLGSAAFMAVGAY-----AAYNFQLRVEGI----PIVATL 107 L++ + ALGLNV+ G+AG L LG AF A+GAY A+ F + +E P + Sbjct: 47 LLYIMLALGLNVVVGFAGLLDLGYIAFYAIGAYLTALLASPQFAVVLESFVNQYPAIGET 106 Query: 108 IL--------SGGC----------AALV----GVLFGLPSLRIKGFYLAVATLAAQFFVV 145 +L G AALV G L G P+L+++G YLA+ TL + Sbjct: 107 LLWVFGPEIAQNGIHLSLWAIVPLAALVAGFFGALLGAPTLKLRGDYLAIVTLGFGEIIR 166 Query: 146 WALTKF--PWFSNNSSSGVISTPKIDLFGIAIDTP----------------VRKYLFVLA 187 + P N G+ I +FG++++ V Y F+ Sbjct: 167 IFMNNLNGPVNITNGPQGINMIDPIRIFGVSLNGEAGSRATVMIGDYAMPSVNAYYFLFL 226 Query: 188 VVSV-LALVAKNLVRSSTGRAWMAVRDMDVAAEVIGIPLMRTKLTAFAVSSFYCGVAGAL 246 + + + ++ L S GRA++A+R+ ++AA+ +GI KL AFA+ + + G+AGA+ Sbjct: 227 FLCIAIIFISVRLQNSRLGRAFVAIREDEIAAKAMGINTRNVKLLAFAMGASFGGIAGAM 286 Query: 247 YAFCYLGSVEPDGFSLDLSFRILFMIIIGGVGSILGSFLGSAFILLLPIFLDNALPPL-A 305 +A + G V P+ FSL S +L M+++GG+G I G LG + LP L + + PL Sbjct: 287 FA-SFQGFVSPESFSLTESIAVLAMVVLGGMGHIPGVVLGGIILAALPEVLRHVVEPLQQ 345 Query: 306 ALLHLPFTNATVSHIQMMVFGALIIFFLIAEPHGLARLWQIAKEKLR 352 +L +A V ++ +++G ++ ++ P G LW K + R Sbjct: 346 SLFGEVLIDAEV--LRQLLYGLAMVLIMLYRPSG---LWPSPKSEDR 387 >gi|152981502|ref|YP_001352470.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 346 Score = 93.2 bits (230), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 95/319 (29%), Positives = 155/319 (48%), Gaps = 37/319 (11%) Query: 41 PLLGSEYWFSAILVPFLVFALAALGLNVLTGYAGQLSLGSAAFMAVGAYA----AYNFQL 96 PL+ + + +++ +F +AA+ LN+L GY GQLSLG AF +GAY + F + Sbjct: 18 PLIWPDPYLLSVVASVGIFVIAAISLNLLLGYTGQLSLGHVAFFGLGAYTTSLLSLGFDV 77 Query: 97 RVEGI--PIVAT---LILSGGC----AALVGVLFGLPSLRIKGFYLAVATLA-AQFFVV- 145 + G+ P+V T + +S C AA+ G L G + R++G Y + T++ AQ + Sbjct: 78 TLWGMTEPLVVTAKPVWVSFACGIAFAAIAGWLLGKLAFRVRGAYFVIVTISFAQVMRMV 137 Query: 146 ---WA-LTKFPWFSNNSSSGVISTPKIDLFGIAIDTPVRKYLFVLAVVSVLALVAKNLVR 201 W LT+ P NN + + P + +A + + Y VLAV V L+ +V Sbjct: 138 SLNWVDLTEGPMALNNIPALTMWVPGEGVIDLA--SKLSTYWLVLAVAVVSYLLVAAIVH 195 Query: 202 SSTGRAWMAVRDMDVAAEVIGIPLMRTKLTAFAVSSFYCGVAGALYAFCYLGSVEPDGFS 261 S GRA +A+R+ + A +GI + A ++ G AG LYA + ++PD F Sbjct: 196 SRIGRAMIALRENETLARSVGIRVTHYLGIATIFAAGIAGAAGGLYAHT-VRIIDPDVFM 254 Query: 262 LDLSFRILFMIIIGGVGSILGSFLGSAFILLLPIFLDNALPPLAALLHLPFTNATVSHIQ 321 + ++ M+I+GG G++ G +G LLP L + P IQ Sbjct: 255 FMFTIMMVIMVIVGGKGTLAGPVVGGLLFGLLPEVLRGVVSP---------------EIQ 299 Query: 322 MMVFGALIIFFLIAEPHGL 340 M++G L+I L+ P G+ Sbjct: 300 WMIYGVLMIAVLVFMPKGV 318 >gi|152981704|ref|YP_001352348.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 387 Score = 82.4 bits (202), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 78/298 (26%), Positives = 137/298 (45%), Gaps = 39/298 (13%) Query: 57 LVFALAALGLNVLTGYAGQLSLGSAAFMAVGAYAAYNFQLRVEGIPIVATLILSGGCAAL 116 L+++ A +GL + G+ G + AAF +G+Y G+P +A + +SG AA+ Sbjct: 101 LLYSTACMGLTLQFGFVGVANFAGAAFFGIGSYTTAVLATH-TGLPQLANIAISGVVAAI 159 Query: 117 VGVLFGLPSLRIKGFYLAVATLA-----AQFFVVWALTKFPW---------FSNNSSSGV 162 +G + LP LR +G Y A+ T+A F V + P F + + G Sbjct: 160 IGSVLILPVLRTRGHYAALVTIAFGILFKTFIEVNDVLGGPQGLQVPGMQLFGHAFNEG- 218 Query: 163 ISTPKIDLFGIAIDTPVRKYLFVLAVVSVLALVAKNLVRSSTGRAWMAVRDMDVAAEVIG 222 LFGI V L L + + ++ K L RS G + VR + AA G Sbjct: 219 -----FTLFGIEFSFYVSYVLLSLVICAGAFVLVKALERSWVGLSMDVVRTDETAAATFG 273 Query: 223 IPLMRTKLTAFAVSSFYCGVAGALYAFCYLGSVEPDGFSLDLSFRILFMIIIGGVGSILG 282 + + R K+ AF + + + G+AG++Y +G + P+ F+ S ++ + I+GG+G+ +G Sbjct: 274 LHIARWKVIAFTMGNLFAGIAGSVYGMM-VGFIAPNNFTFSDSLLLVSIAILGGLGNPVG 332 Query: 283 SFLGSAFILLLPIFLDNALPPLAALLHLPFTNATVSHIQMMVFGALIIFFLIAEPHGL 340 + +L+LP L + +++++ AL+I L+ P GL Sbjct: 333 LIPAAIIVLMLPEKLQ-----------------FIQEYRVLLYAALVIAILLFRPEGL 373 >gi|152981595|ref|YP_001351787.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 343 Score = 78.6 bits (192), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 77/260 (29%), Positives = 124/260 (47%), Gaps = 12/260 (4%) Query: 41 PLLGSEYWFSAILVPFLVFALAALGLNVLTGYAGQLSLGSAAFMAVGAYAAYNFQLRVEG 100 PL S+Y+ + +L+PF +A+ LG N+L GY G LS G A F+A+GAYAA + Sbjct: 44 PLFVSQYYMT-LLIPFFAYAVILLGFNLLFGYGGLLSFGHALFIAIGAYAAAAMVAKTGM 102 Query: 101 IPIVATLILSGGCAALVGVLFGLPSLRIKGFYLAVATLAAQFFVVWALTKFPWFSNNSSS 160 I L+ + + ++ + + R G + + TL+ L KF + + S Sbjct: 103 ISFEMMLLTAVVASFIISIPIAWLASRFTGIFFGMLTLSFGMLFHSFLNKFYYITGGDSG 162 Query: 161 GVISTPKIDLFGIAIDTPVRK-------YLFVLAVVSVLALVAKNLVRSSTGRAWMAVRD 213 + P+ LFG+ +D + Y + L +V +L V +VRS G MA RD Sbjct: 163 --MRVPRPSLFGMELDQFDKTAFLGGPFYYYCLVMVLLLTWVMWRIVRSPYGIHLMASRD 220 Query: 214 MDVAAEVIGIPLMRTKLTAFAVSSFYCGVAGALYAFCYLGSVEPDGFSLDLSFRILFMII 273 + A +G+ + + AF VS+ Y + G + G +P+ S ++FM + Sbjct: 221 NAIKALYLGVKIRSVRAIAFVVSAVYASIGGVILG-VNTGLADPELAYWTHSGHLVFMAV 279 Query: 274 IGGVGSILGSFLGS-AFILL 292 +GG LG LG+ FILL Sbjct: 280 LGGYQEFLGPVLGAFVFILL 299 >gi|152981369|ref|YP_001353498.1| ABC-type branched-chain amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 365 Score = 71.2 bits (173), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 81/289 (28%), Positives = 124/289 (42%), Gaps = 41/289 (14%) Query: 51 AILVPFLVFALAALGLNVLTGYAGQLSLGSAAFMAVGAYAAYNFQLRVEGIPIVAT---- 106 A++ F+ +A+AAL L+++ GY G LSLG F A+G YA + +R G V Sbjct: 49 ALVGKFMCYAMAALALDLVWGYTGILSLGHGVFFALGGYAHGMYLMRSIGRDGVYQSNLP 108 Query: 107 ------------------------LILSGGCAALVGVLFGLPSLR--IKGFYLAVATLAA 140 ++L L+ +FG + R IKG Y ++ T A Sbjct: 109 DFMVFLNWKEYPWYWWMTEHFWFAMLLVVLVPGLLAFIFGYFAFRSRIKGVYFSIITQAM 168 Query: 141 QFFVVWALTKFPWFSNNSSSGVIS--TPKIDLFGIAIDTPVRK---YLFVLAVVSVLALV 195 F + +F N++ G + T + G I P K YL LA + V Sbjct: 169 TFAFM-----LLFFRNDTGFGGNNGFTDFKRILGFTITDPSTKAVLYLVTLAFLLAALFV 223 Query: 196 AKNLVRSSTGRAWMAVRDMDVAAEVIGIPLMRTKLTAFAVSSFYCGVAGALYAFCYLGSV 255 + +V S GR VRD + IG + KL + +S+ CG+AGALY +G + Sbjct: 224 CRAIVTSKLGRVLQGVRDSESRLMFIGYNPLWFKLFVWTLSAVVCGIAGALYV-PQVGII 282 Query: 256 EPDGFSLDLSFRILFMIIIGGVGSILGSFLGSAFILLLPIFLDNALPPL 304 P S S ++ +GG GS+LG +G+ + L + A P L Sbjct: 283 NPSEMSPANSIEMVIWAAVGGRGSLLGPIIGAFTVNGLKSWFTAAFPDL 331 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.331 0.144 0.440 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 645,298 Number of extensions: 21251 Number of successful extensions: 117 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 111 Number of HSP's successfully gapped: 7 Length of query: 358 Length of database: 1,221,021 Length adjustment: 84 Effective length of query: 274 Effective length of database: 910,473 Effective search space: 249469602 Effective search space used: 249469602 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 130 (54.7 bits)