BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2600.p (288 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino a... 197 8e-52 gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino a... 190 8e-50 gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino a... 175 3e-45 gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC tran... 152 2e-38 gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino a... 140 1e-34 >gi|152979805|ref|YP_001352472.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 249 Score = 197 bits (500), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 105/240 (43%), Positives = 153/240 (63%), Gaps = 8/240 (3%) Query: 26 LSINNIEVIYDHVILVLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVTK 85 L I I V Y + K +SL+V EG IV L+GANGAGKSTTL+AI+ L + Sbjct: 17 LKIEEITVRYGATTGINK-ISLEVHEGEIVTLIGANGAGKSTTLRAINGL-----EPLAH 70 Query: 86 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISHAEVKHEL 145 GSI G V +P +++ G+ EGR F LTV EN+ GAY R A+V+ ++ Sbjct: 71 GSIRMNGHLVSGASPAEVIDHGISHCPEGRRVFPQLTVRENMEMGAYRRK-DKAKVRDDM 129 Query: 146 EKIYAYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 205 E+++ FPRL+ R + +G SGGEQQM AI RA+M++P +++ DEPS+GLAP IVE+IF Sbjct: 130 ERMFDKFPRLRERVQQVAGTLSGGEQQMLAIARALMSRPRLVMFDEPSLGLAPNIVEQIF 189 Query: 206 EIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 +++++ S E + L+ EQN AL D GY+LENG +V +G+++E+ N +++ YLG Sbjct: 190 SLIREIRS-EGTTVLIVEQNAYAALAMCDRGYLLENGHIVTQGSSAEMRANPEIRRAYLG 248 >gi|152980365|ref|YP_001354235.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 190 bits (483), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 102/240 (42%), Positives = 158/240 (65%), Gaps = 6/240 (2%) Query: 26 LSINNIEVIYDHVILVLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVTK 85 L I+ ++V Y + V KGV L+V +G ++ L+GANGAGK+TTLKAI+ L R + Sbjct: 6 LKISGLKVAYGGIEAV-KGVDLEVHKGELITLIGANGAGKTTTLKAITGTLPNCR---VE 61 Query: 86 GSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISHAEVKHEL 145 G IE+ G+ + + +LV++ + V EGR F ++++ENLL GA+TR + ++ Sbjct: 62 GHIEYAGQPIKGLHSFELVRKKLAMVPEGRGVFTRMSIQENLLMGAFTRDDKDG-IAADI 120 Query: 146 EKIYAYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIF 205 +K + FPRLK R +G SGGEQQM A+ RA+M+ P ++LLDEPSMGL+P +VE+IF Sbjct: 121 DKWFGVFPRLKERAAQMAGTLSGGEQQMLAMARALMSHPELLLLDEPSMGLSPIMVEKIF 180 Query: 206 EIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 E+++ + S + ++ LL EQN +AL+ A+ Y++E+G V M G A ++ + V+E YLG Sbjct: 181 EVIRTV-SAQGITILLVEQNAKLALQAANRAYVMESGLVTMHGDAQQMLSDPKVREAYLG 239 >gi|152980280|ref|YP_001352350.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 235 Score = 175 bits (443), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 141/231 (61%), Gaps = 8/231 (3%) Query: 35 YDHVILVLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVTKGSIEFRGER 94 YD V VL VS++V G+I +LGANGAGKST +++I L +G++ G GE+ Sbjct: 13 YDKVN-VLHDVSIEVAPGKITCILGANGAGKSTLIRSILGLTPPRQGEILWGGKNLAGEK 71 Query: 95 VDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISHAEVKHELEKIYAYFPR 154 ++++ G+ + EGR F +TV ENL GA+ S V+ L ++Y FPR Sbjct: 72 T-----HNIIASGISCIPEGRKVFPRMTVAENLALGAFLES-SSTVVRDRLARVYEIFPR 125 Query: 155 LKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIFEIVKDLNSK 214 LK R +G SGGEQ M +IGR +MA+P ++++DEPS+GL+P V+E F+++K +N+ Sbjct: 126 LKERAAQLAGTMSGGEQAMVSIGRGLMAEPKLLVIDEPSLGLSPLYVKENFKVIKQINAL 185 Query: 215 EKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKEFYLG 265 ++ LL EQN L + +GY+L GRV+ +G A L+ N+DV+ Y G Sbjct: 186 -GITVLLVEQNARQTLAISHYGYVLSQGRVMAQGTAEALSSNDDVRSAYFG 235 >gi|152980086|ref|YP_001353243.1| amino-acid ATP-binding ABC transporter protein [Janthinobacterium sp. Marseille] Length = 231 Score = 152 bits (385), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 90/247 (36%), Positives = 143/247 (57%), Gaps = 18/247 (7%) Query: 22 MGKALSINNIEVIY--DHVILVLKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAE 79 M L I N+ Y HV L G+ + + G IV+LLG NGAG+STT+KA ++ A Sbjct: 1 MSALLEIKNLHAFYGKSHV---LHGIDITIQSGEIVSLLGRNGAGRSTTVKAAMGMVAA- 56 Query: 80 RGDVTKGSIEFRGERVDRMTPNDLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISHA 139 G+I F+G+ + + + ++G+ V E R F L+V +NL+ GA A Sbjct: 57 -----TGTIRFKGKEILGLPTYRIARQGLGYVAESREIFPTLSVAQNLVLGA------QA 105 Query: 140 EVKHELEKIYAYFPRLKVRRKSQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQ 199 + + + +Y FPRL+ R+ Q+G SGGEQQM A+ R +M P +I++DEP+ GLAPQ Sbjct: 106 KSRWSADDMYRLFPRLQERQHVQAGVLSGGEQQMLALCRTLMGDPELIMIDEPTEGLAPQ 165 Query: 200 IVEEIFEIVKDLNSKEKVSFLLAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDV 259 +V + +++L + VS LL EQ +AL+ + Y++ +G+VV EG+ +L + V Sbjct: 166 MVALVANFLQELVQR-GVSVLLIEQKLAIALKISQRVYVMGHGQVVFEGSPQDLQADAAV 224 Query: 260 KEFYLGV 266 ++ +LGV Sbjct: 225 RQEWLGV 231 >gi|152980737|ref|YP_001353500.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 232 Score = 140 bits (353), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 125/221 (56%), Gaps = 10/221 (4%) Query: 42 LKGVSLDVPEGRIVALLGANGAGKSTTLKAISNLLHAERGDVTKGSIEFRGERVDRMTPN 101 L+G+SL V +G+ ++LLG NG GK+T LK + +L V G++ G + ++ P+ Sbjct: 17 LRGISLSVEKGKCLSLLGRNGVGKTTLLKCLMGVL-----PVAAGNVSLDGRDITKLKPH 71 Query: 102 DLVKRGVIQVMEGRHCFGHLTVEENLLTGAYTRGISHAEV-KHELEKIYAYFPRLKVRRK 160 G+ V +GR F LTVEENLL G T+ A V K E +Y FP LK Sbjct: 72 QRAALGIAYVPQGREIFARLTVEENLLMGMATKSGKKASVIKGE---VYELFPVLKEMLH 128 Query: 161 SQSGYTSGGEQQMTAIGRAMMAKPSMILLDEPSMGLAPQIVEEIFEIVKDLNSKEKVSFL 220 + G SGG+QQ AI RA++A+P +I+LDEP+ G+ P I+++I ++ L + + L Sbjct: 129 RRGGDLSGGQQQQLAIARALLAEPKLIILDEPTEGIQPSIIKDIGRVISLLRERGDIGIL 188 Query: 221 LAEQNTMVALRYADFGYILENGRVVMEGAASELADNEDVKE 261 L EQ A AD +L G VV G+ E+ D+++VK+ Sbjct: 189 LCEQYFDFARELADTFVVLSRGEVVASGSQQEM-DDDNVKK 228 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.133 0.370 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 608,075 Number of extensions: 24427 Number of successful extensions: 275 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 213 Number of HSP's successfully gapped: 49 Length of query: 288 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 206 Effective length of database: 917,867 Effective search space: 189080602 Effective search space used: 189080602 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)