BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2589.p (306 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [... 480 e-137 gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain... 151 6e-38 gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinoba... 120 1e-28 gi|152982877|ref|YP_001352253.1| hypothetical protein mma_0563 [... 119 2e-28 gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinoba... 108 5e-25 >gi|152982609|ref|YP_001351719.1| hypothetical protein mma_0029 [Janthinobacterium sp. Marseille] Length = 313 Score = 480 bits (1236), Expect = e-137, Method: Compositional matrix adjust. Identities = 221/305 (72%), Positives = 262/305 (85%) Query: 1 MEPDSAVYKTLLESTKAIPWKIDWSTMQFTYIGPQIEQLLGWTPESWKSADDWAMRIHAD 60 MEPDSAVYKTLLESTKAIPWKIDW+TMQFTYIGPQIE +LGW +SW S +DWA RIH D Sbjct: 8 MEPDSAVYKTLLESTKAIPWKIDWATMQFTYIGPQIEGVLGWPQDSWVSVNDWASRIHPD 67 Query: 61 EREAVVNFCISQSKAGADHEADYRALTRDGEHVWIRDVVHVVRNPDGSPNALIGFMFDIT 120 ER+A+VNFC++QS+AGADHEADYRAL ++GE+VWIRDVVHV R PDGS ++LIGFMFDI Sbjct: 68 ERDAIVNFCVAQSQAGADHEADYRALAQNGEYVWIRDVVHVARKPDGSVDSLIGFMFDIN 127 Query: 121 ERKKTEARLIELQKELEALSYRDGLTNVANRRMFDSALEVEWANAISTRAPLSLIMLDID 180 ERKKTEA+LI+LQKELE LS++DGLT VANRRMFDS LE+EWANA++++ PLS+I+LDID Sbjct: 128 ERKKTEAKLIDLQKELETLSFKDGLTGVANRRMFDSVLELEWANAMNSKRPLSIILLDID 187 Query: 181 YFKQYNDHYGHIRGDECLKQVAQLLSQTATRSRDFFARYGGEEFVLILPECDEKAALQVA 240 YFKQYNDHYGHI+GD CLKQVA+ L+ A R RDFF R+GGEEF+LILPE +EK+AL VA Sbjct: 188 YFKQYNDHYGHIQGDHCLKQVAKTLNNAAIRQRDFFGRFGGEEFILILPETNEKSALTVA 247 Query: 241 QRCRSLIAQAAIPHAGSQVAPHITISQGVSTIVPSPMDQRIDFLELADRRLYRAKQLGRN 300 +RCR LI + IPH S V+ +TIS GV T++PS D+ + F+E ADRRLY AKQ GRN Sbjct: 248 ERCRMLIFKEQIPHEKSAVSQLLTISLGVHTVIPSYGDEALKFIEEADRRLYLAKQKGRN 307 Query: 301 CIAVD 305 CIAVD Sbjct: 308 CIAVD 312 >gi|152981055|ref|YP_001351702.1| response regulator/GGDEF domain-containing protein [Janthinobacterium sp. Marseille] Length = 341 Score = 151 bits (381), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 77/173 (44%), Positives = 107/173 (61%), Gaps = 3/173 (1%) Query: 131 ELQK---ELEALSYRDGLTNVANRRMFDSALEVEWANAISTRAPLSLIMLDIDYFKQYND 187 +LQK EL+ L+ DGLT +ANRR FD L EW A + LS++++D+D FK YND Sbjct: 162 QLQKSNFELQRLTNTDGLTGIANRRYFDDYLSAEWKRARREQQELSILLIDVDNFKLYND 221 Query: 188 HYGHIRGDECLKQVAQLLSQTATRSRDFFARYGGEEFVLILPECDEKAALQVAQRCRSLI 247 YGH+ GD LKQVA+ L +A R D AR+GGEEF +ILP A+ ++ + + Sbjct: 222 TYGHVAGDLVLKQVAKSLEASAMRPADLSARFGGEEFAIILPATGSNGAVISGKKVCAAV 281 Query: 248 AQAAIPHAGSQVAPHITISQGVSTIVPSPMDQRIDFLELADRRLYRAKQLGRN 300 IPHA + + +T+S G +TI P D +ELAD+RLYRAK+LG++ Sbjct: 282 EALRIPHAHAAIGEWLTVSVGAATITPQAEQVPNDLIELADKRLYRAKELGKH 334 >gi|152982153|ref|YP_001353313.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 605 Score = 120 bits (301), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 81/190 (42%), Positives = 106/190 (55%), Gaps = 10/190 (5%) Query: 118 DITERKKTEARLIELQK---ELEALSYRDGLTNVANRRMFDSALEVEWANAISTRAPLSL 174 D ER +E R EL+K E E LS D LT NRR F+ +E+A PLS+ Sbjct: 421 DDLERIVSE-RTAELRKARDEAERLSRVDALTGAFNRRYFNEVAALEFAKVRRLHQPLSV 479 Query: 175 IMLDIDYFKQYNDHYGHIRGDECLKQVAQLLSQTATRSRDFFARYGGEEFVLILPECDEK 234 I DID FKQ ND+YGH GDE +K A+ +S+ A R DF AR GGEEF ++LP + Sbjct: 480 ISFDIDLFKQINDNYGHAAGDEVIKAAAR-VSRNAVREIDFVARIGGEEFAILLPGSTIE 538 Query: 235 AALQVAQRCRSLIAQAAIPHAGSQVAPHITISQGVSTIVPSPMDQRID-FLELADRRLYR 293 A A+R R L+ + + G +A T S GV+ + S DQ + L+ AD +YR Sbjct: 539 QAAATAERLRELVIAEQVSYQGKLLA--FTASFGVAQLKDS--DQSFEALLQRADEMMYR 594 Query: 294 AKQLGRNCIA 303 AK LGRN +A Sbjct: 595 AKNLGRNRVA 604 >gi|152982877|ref|YP_001352253.1| hypothetical protein mma_0563 [Janthinobacterium sp. Marseille] Length = 321 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/166 (44%), Positives = 96/166 (57%), Gaps = 3/166 (1%) Query: 139 LSYRDGLTNVANRRMFDSALEVEWANAISTRAPLSLIMLDIDYFKQYNDHYGHIRGDECL 198 LS DGLTN+ NR + L V A + + PLSLIM+D+D+FK++ND YGH+ GD L Sbjct: 159 LSMVDGLTNLHNRAWLNDKLSVLVEEAHAGKRPLSLIMIDLDHFKRFNDEYGHLLGDTAL 218 Query: 199 KQVAQLLSQTATRSRDFFARYGGEEFVLILPECDEKAALQVAQRCRSLIAQAAIPHAGSQ 258 + A +LS A R DF RYGGEE ++ILP+ + A VAQR + A + Sbjct: 219 RTAAGVLS-AALRPSDFAVRYGGEELIVILPDSNGAAGTMVAQRLCERMRLAVVFADMHM 277 Query: 259 VAPHITISQGVSTIVPSPMDQRIDFLELADRRLYRAKQLGRNCIAV 304 PHIT S GV+ + +P L AD LYRAKQ GRN +AV Sbjct: 278 PLPHITASFGVAML--APQQDADGLLAAADAALYRAKQAGRNQVAV 321 >gi|152982523|ref|YP_001355121.1| diguanylate cyclase [Janthinobacterium sp. Marseille] Length = 408 Score = 108 bits (269), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 64/173 (36%), Positives = 100/173 (57%), Gaps = 8/173 (4%) Query: 134 KELEALSYRDGLTNVANRRMFDSALEVEWANAISTRAPLSLIMLDIDYFKQYNDHYGHIR 193 K++E + RD L NRR +ALE + A + APL L ++D+D+FK+ ND GH+ Sbjct: 234 KDIEEDARRDVLLGCFNRRYIVAALEQQKRMADESGAPLCLAVIDLDHFKRVNDEAGHLG 293 Query: 194 GDECLKQVAQLLSQTATRSRDFFARYGGEEFVLILPECDEKAALQVAQRCRSLIAQAAIP 253 GDE L+ A+ ++++ R D F RYGGEEF+L+LPE AAL +++R R+ I Q Sbjct: 294 GDEVLRTFAR-VAESNVRKHDIFGRYGGEEFLLVLPETPLSAALNISERIRTQIEQ---- 348 Query: 254 HA-GSQVAPHITISQGVSTIVPSPMDQRIDFLELADRRLYRAKQLGRNCIAVD 305 H ++ +T+S G++ + + +D D +Y AKQ GRN + V+ Sbjct: 349 HDWQGKLRNRVTVSIGLTQYIAG--ESVLDLFSRTDTAMYMAKQSGRNQVVVE 399 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.134 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 696,995 Number of extensions: 27045 Number of successful extensions: 164 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 29 Length of query: 306 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 223 Effective length of database: 914,170 Effective search space: 203859910 Effective search space used: 203859910 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)