BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2587.p (386 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthin... 114 1e-26 gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidored... 105 5e-24 gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthin... 86 4e-18 gi|152981572|ref|YP_001351941.1| acyl-CoA dehydrogenase family p... 55 9e-09 >gi|152981179|ref|YP_001352277.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 596 Score = 114 bits (285), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/375 (27%), Positives = 169/375 (45%), Gaps = 45/375 (12%) Query: 49 GFCGLYTPENEGGLGLSRLDATIVFEELARACTSTAAYLTIHNMVSWMVATWGQGELKEE 108 G+ G+ P + GG GL +L AT E L A S A + + + T G + KE+ Sbjct: 88 GWQGVQHPVDFGGQGLPKLVATPCMEMLNSASLSFALCPLLTDGAIEALMTAGSDQQKEK 147 Query: 109 WCAQLAAGHKIGSYCLTEPGSGSDAASLKTTA-RRVDDFYLINGSKAFISGAGSTDLL-- 165 + AG G+ LTEP +GSD A +++ A + D Y I+G+K FI+ G D+ Sbjct: 148 FLPNFIAGKWTGTMNLTEPQAGSDLALVRSRAVPQGDGTYKISGTKIFIT-YGEHDMAEN 206 Query: 166 ---VVMART--GGPGARGVSAIVVPG---DTPGISYGKK--------ESKMGWNSQPTRT 209 +V+ART G +G+S +VP + G S G++ E K+G + PT Sbjct: 207 IIHLVLARTPDAPEGVKGISLFLVPKFLVNEDG-SLGERNDAFCVSIEHKLGIKASPTAV 265 Query: 210 ISFDNVKVPVGNLLGEEGEGFVFAMKGLDGGRINIATCSVGAAQAALDAAHAYIKERKQ- 268 + F + +G L+G+E G ++ R + + A+ A A AY K+R Q Sbjct: 266 LQFGDHGGAIGTLIGQENRGLETMFIMMNAARFAVGIQGISVAERAYQKAVAYAKDRVQS 325 Query: 269 -------FGRPIADFQALQFKLADMQTELVAARQMVRLAATKLDAGSPEATT-------- 313 I ++ L M+ ++ AAR + + A+ D Sbjct: 326 KDLEGSATAVSIIHQPDVRRMLMSMRAQIEAARALAYVGASAFDIAHHHGDEKVRDAQQA 385 Query: 314 ----YCAMAKRLATDLGFNICNEALQLHGGYGYIREYPLERYFRDVRVHQILEGTNEIMR 369 + K +T++ ++ + LQ+HGG G+I E +Y+RD R+ I EGT I Sbjct: 386 FYEFLVPIIKGWSTEMSIDVASTGLQIHGGMGFIEETGAAQYYRDARILTIYEGTTAIQ- 444 Query: 370 VIISRNLLGRDTLDD 384 + +L+GR T+ D Sbjct: 445 ---ANDLVGRKTVRD 456 >gi|152980951|ref|YP_001354781.1| acyl-CoA dehydrogenase oxidoreductase protein [Janthinobacterium sp. Marseille] Length = 596 Score = 105 bits (262), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 107/389 (27%), Positives = 159/389 (40%), Gaps = 72/389 (18%) Query: 49 GFCGLYTPENEGGLGLSRLDATIVFEELARACTSTAAYLTIHNMVSWMVATWGQGELKEE 108 G+ L GG GL + +E L + + Y + + + G + K Sbjct: 92 GWPSLTCDPEYGGQGLPMVLQNSFYEMLNSSNQAWTMYPGLSHGAYECLYAHGTEQQKAL 151 Query: 109 WCAQLAAGHKIGSYCLTEPGSGSDAASLKTTAR-RVDDFYLINGSKAFISGAGSTD---- 163 + +L +G G+ CLTE G+D L++ A + D Y I GSK FIS AG D Sbjct: 152 YLPKLVSGEWTGTMCLTEAQCGTDLGLLRSKAEPQADGSYKITGSKIFIS-AGEHDMAAN 210 Query: 164 -LLVVMART--GGPGARGVSAIVVPGDTPG----------ISYGKKESKMGWNSQPTRTI 210 L +V+AR G +G+S +VP P I G E KMG + T + Sbjct: 211 ILHLVLARLPDAPEGTKGISLFIVPKFLPDAAGKLGARNPIFCGALEEKMGIHGNATCQM 270 Query: 211 SFDNVKVPVGNLLGEEGEGFVFAMKGLDGGRINIATCSVGAAQAALDAAHAYIKERKQF- 269 + D G L+GE +G ++ R+ + S+G + A A Y K+R Q Sbjct: 271 NIDGA---TGWLIGEPNKGLNAMFVMMNAARLGVGMQSLGLTEVAYQNALVYAKDRLQMR 327 Query: 270 ----------------------------------GRPIADFQALQFKLADMQTELVAARQ 295 GR + + ALQ + EL + Sbjct: 328 SLTGPKATDKPADPIIVHPDVRRMLLTAKAYAEGGRAFSSYVALQ-----IDKELNHPDE 382 Query: 296 MVRLAATKLDAGSPEATTYCAMAKRLATDLGFNICNEALQLHGGYGYIREYPLERYFRDV 355 VR A E + K TD G+ +EA+Q++GG+G+I E+ +E+Y RD Sbjct: 383 AVRAEAVD------EVALLTPIIKAFLTDNGWISTSEAMQVYGGHGFISEWGMEQYVRDS 436 Query: 356 RVHQILEGTNEIMRVIISRNLLGRDTLDD 384 R++ I EGTN I S +LLGR L D Sbjct: 437 RINMIYEGTNTIQ----SLDLLGRKILLD 461 >gi|152980833|ref|YP_001354021.1| acyl-CoA dehydrogenase [Janthinobacterium sp. Marseille] Length = 547 Score = 85.9 bits (211), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 79/270 (29%), Positives = 122/270 (45%), Gaps = 31/270 (11%) Query: 124 LTEPGSGSDAASLKTTARRVDDF-----YLINGSKAFISGAGSTDLLVVMARTGGPGARG 178 +TE GSD S T AR ++ Y + G K F S A D +V+ART G Sbjct: 182 MTEKQGGSDVRSNTTVARPLESAGRGQPYALTGHKWFFS-APMCDAHLVLARTEA----G 236 Query: 179 VSAIVVP-----GDTPGISYGKKESKMGWNSQPTRTISFDNVKVPVGNLLGEEGEGFVFA 233 +S VP G I + + K+G S + + F + G ++GE+G G Sbjct: 237 LSCFFVPRWRPDGSKNAILIQRLKDKLGNRSNSSSEVEFQDA---YGVMVGEDGRGIPTI 293 Query: 234 MKGLDGGRINIATCSVGAAQAALDAAHAYIKERKQFGRPIADFQALQFKLADMQTELVAA 293 ++ + R++ S G + AL A + + R FG P+A+ +Q LAD+ E AA Sbjct: 294 IEMANHTRLDCVIGSTGLMRNALVQAIHHARHRHAFGLPLAEQALMQNVLADLALESEAA 353 Query: 294 -RQMVRLAATKLDAGSPEATTYCAMAKRLATDLG-FNICNEAL-------QLHGGYGYIR 344 R M+RLA P + +R+ T F IC AL ++ GG GY+ Sbjct: 354 TRLMLRLAQAAEAIDDPVERAW----RRVVTPAAKFWICKRALEFTGECMEVWGGNGYVE 409 Query: 345 EYPLERYFRDVRVHQILEGTNEIMRVIISR 374 P+ R +R+ V+ I EG+ +M + + R Sbjct: 410 NAPMARMYREAPVNSIWEGSGNVMCLDVLR 439 >gi|152981572|ref|YP_001351941.1| acyl-CoA dehydrogenase family protein [Janthinobacterium sp. Marseille] Length = 437 Score = 54.7 bits (130), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 77/360 (21%), Positives = 138/360 (38%), Gaps = 30/360 (8%) Query: 21 AGEMAPFAAKWDEEAHFPLDVIAKAGELGFCGLYTPENEGGLGLSRLDATIVFEELARAC 80 A E A A+ D E P + K + G G+ P+ GG G+S + +F +RA Sbjct: 32 ADEFAQEASVRDRERRLPFAELKKITQSGLWGITVPKEHGGAGVSYVTLAQIFAIFSRAD 91 Query: 81 TSTAAYLTIHNMVSWMVATWGQGELKEEWCAQLAAGHKIGSYCLTEPGSGSDAASLKTTA 140 S H V ++ G E K+ + ++ AG G+ L E + K Sbjct: 92 GSIGQIPQNHYFVIELIREHGTEEQKKFFFERILAGDHFGN-ALVELNAK------KPED 144 Query: 141 RRV------DDFYLINGSKAFISGAGSTDLLVVMARTGGPGARGVSAIVVPGDTPGISYG 194 R+V D+ Y K + +G+ D + + ++ G++ Sbjct: 145 RKVSLFADGDEHYRATVRKYYATGSLYADWIPTALNSEDKEEHHLA--FFSRHAEGLTII 202 Query: 195 KKESKMGWNSQPTRTISFDNVKVPVGNLLGEEGEGFVFAMKGLDGGRINIATCSVGAAQA 254 + +G + + ++ DN ++ NL+ E G+I A G A+A Sbjct: 203 DDWAGLGQRTTASGSVILDNARI-AKNLVVSHREKKEHVSPVGPTGQIMHAAIDTGIARA 261 Query: 255 ALDAAHAYIKER---KQFGRPIADFQALQF---KLADMQTELVAARQMVRLA-------- 300 A +A A+I+ R K P A ++ Q ++ D+ L A ++ A Sbjct: 262 AFEATIAFIRGRNPKKPDAAPDASWEEDQLTIREIGDLSVALHGAEALLERAGRIIDHAY 321 Query: 301 ATKLDAGSPEATTYCAMAKRLATDLGFNICNEALQLHGGYGYIREYPLERYFRDVRVHQI 360 T L +A+ + + +T I N+ + G ++ L+RY+RD R H + Sbjct: 322 VTGLQTDWTKASIAVSEVRAASTHAALLITNKLFEFSGTQATASKHNLDRYWRDARTHTL 381 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.319 0.135 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 870,695 Number of extensions: 36429 Number of successful extensions: 122 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 6 Length of query: 386 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 301 Effective length of database: 906,776 Effective search space: 272939576 Effective search space used: 272939576 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)