BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2578.p
         (277 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981968|ref|YP_001353567.1| DNA repair exonuclease [Janthin...   143   1e-35

>gi|152981968|ref|YP_001353567.1| DNA repair exonuclease
           [Janthinobacterium sp. Marseille]
          Length = 281

 Score =  143 bits (360), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 92/263 (34%), Positives = 142/263 (53%), Gaps = 8/263 (3%)

Query: 1   MRKLIHLSDLHFGRIDAHIIEPLIAQIHELRPDLIVVSGDLTQRARSKQFKQARQFLDAL 60
           M+ ++H+SD HFG   A +++ L    H   P+L+++SGD+TQRAR+ +FK AR F++ L
Sbjct: 1   MKTVLHISDPHFGTERAPVVKALERLAHAHAPNLLILSGDITQRARAVEFKLARAFVERL 60

Query: 61  PQP-QLVVPGNHDVPLFNVAARLLQPLRQYKRHITPDLQPKYVDEEIAVVGINTARSLTI 119
             P  +V+ GNHD+PLF+V  R+  P  +Y R   P+L+P +   ++ V+ + T R    
Sbjct: 61  AIPSHIVIAGNHDIPLFDVMTRIFLPYTRYCRSFGPELEPVHDSPDLLVLAVRTTRRYRH 120

Query: 120 KDGRVNDRQIELARRELAAVGEHLVKIIVTHHP-FDLPAGPQHHGLVGQAVPAMRAFALC 178
            +G V+D QIE   + L   G+  ++I+VTH P F      + H L G    A+  +A  
Sbjct: 121 IEGEVSDVQIERVAQGLKQAGDKQLRIVVTHQPVFVTHEVDEEHLLRGHQ-RAIGRWAEA 179

Query: 179 GADLLLAGHVHTSSAVSSAGRYHIPGYSALVVQAGTATSTRGRGE-NNSFNVLQVEAH-- 235
           GADL+L GH+H     +              VQAGTA S+R R + NNS N ++      
Sbjct: 180 GADLILGGHIHRPFTCALHEELADLPRRVWAVQAGTAVSSRIRHDSNNSVNFIRYGCADA 239

Query: 236 --QIVVHRLGWESEQNSFALAAS 256
             + +V R  +  E + F L  S
Sbjct: 240 PLRCIVERWDYNDEADEFLLKDS 262


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 666,066
Number of extensions: 26747
Number of successful extensions: 90
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 87
Number of HSP's successfully gapped: 1
Length of query: 277
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 195
Effective length of database: 917,867
Effective search space: 178984065
Effective search space used: 178984065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)