BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2577.p
         (334 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981761|ref|YP_001353568.1| hypothetical protein mma_1878 [...   134   1e-32

>gi|152981761|ref|YP_001353568.1| hypothetical protein mma_1878
           [Janthinobacterium sp. Marseille]
          Length = 321

 Score =  134 bits (336), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 146/280 (52%), Gaps = 31/280 (11%)

Query: 59  QDMLQV---ARQAV---REKVPVVAAGGGDGSINAVASILLAEPQCQSALGVLPLGTLNH 112
           +D+ Q+    RQAV   +E+  VV A GGDG+INAVA+I+L         G LP GT N+
Sbjct: 34  EDVTQIQATVRQAVDAAQEQGAVVVAVGGDGTINAVANIVLGSG---CIFGALPQGTFNY 90

Query: 113 FAKDLNIPLALEEAIANIASGRRIKVDSGEVNGAAFINNSSLGLYPDIVREREKQQARLG 172
           F +   IP  +EE++ ++  G  I V  GEVNG  F+ N+S+GLYP+++ +RE  + + G
Sbjct: 91  FGRTHGIPEEIEESLQDLLHGEPIPVQVGEVNGHIFLVNASVGLYPELLEDRESFKQKYG 150

Query: 173 RGKWLAFTWAAMGAL-RRYPFLHVRLSIDGQEHWRRTPFVFIGNNAYLMRGLDIGKRSTL 231
           R + +A  WAA+  +  R+  LH+ L  DG     RT  +F+GNN   +  + + +   +
Sbjct: 151 RSRLVAI-WAAIATVFGRHRQLHLTLEQDGTRTTMRTTTLFVGNNRLQLEQVGMPQAEAV 209

Query: 232 TEGRLSLYACHHTGRWGLLRLALHALFGRLHEAHDFDVLTATEILIETHRK--------- 282
            +G+L+  A    G+  +L L      GRL +A +    +   + + T  K         
Sbjct: 210 VQGQLAAIAVRPVGKLAMLWLGACGALGRLGDAGNVVGFSFRSLTVATRSKLVNAGTAEA 269

Query: 283 -----------RMRVATDGEVNLMATPLHYRIRPASLEVI 311
                      ++++A DGE+  + TPL +R+ P  L VI
Sbjct: 270 QKSTGRKQQGRQIKLAADGEIMWLETPLEFRVAPEPLLVI 309


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.137    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 848,234
Number of extensions: 36146
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 1
Length of query: 334
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 250
Effective length of database: 910,473
Effective search space: 227618250
Effective search space used: 227618250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)