BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2572.p (311 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982990|ref|YP_001354510.1| AraC family transcriptional reg... 249 2e-67 gi|152981120|ref|YP_001354038.1| transcriptional regulator [Jant... 246 9e-67 gi|152981032|ref|YP_001351912.1| AraC family transcriptional reg... 223 1e-59 gi|152981075|ref|YP_001354771.1| AraC family transcriptional reg... 221 3e-59 gi|152981191|ref|YP_001354772.1| AraC family transcriptional reg... 187 1e-48 >gi|152982990|ref|YP_001354510.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 332 Score = 249 bits (635), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 135/311 (43%), Positives = 192/311 (61%), Gaps = 8/311 (2%) Query: 4 LDLAGPMQALATTNRLQAQDIYRLHVASAQGGAIVTSAGLPVLTQSLAEL--DQALAGAP 61 L+ GPM+ TN+ + +L +A IV++ V + +L L +A++ Sbjct: 24 LEAIGPMKVFDYTNK----HLRKLGLAGGYQVNIVSNKVGMVASDTLMSLYAGKAISAWT 79 Query: 62 LHTLVSPGGSQG--DQFRLDPALVAWIRQRAPQAQRICSVCSGAFHLAEAGLLDGLRVTT 119 L L GS D P +V WI A + R+ ++C+G+F LA AG+L+G RV+T Sbjct: 80 LPDLALIVGSPDIEDALEESPEIVDWITSVASRIGRLAALCTGSFFLAAAGVLNGRRVST 139 Query: 120 HWDSVAQLQRRYPALQVDGEPIYIRQGRIWTSAGVTAGIDLTLALVEQDLGHAAAIATAR 179 HW V +L+ YP + VD + I+IR+G IWTSAGVTA +DLTLALVE+D G A+ AR Sbjct: 140 HWGFVERLRNMYPEVIVDADAIFIREGNIWTSAGVTAAMDLTLALVEEDFGREVALEVAR 199 Query: 180 QLVMFIKRPGGQSQFSAPLASQSAGAGRFVELHAWIAGHLEADLRVENLARQVNMSPRTF 239 LV+++KRPGGQSQFS L+SQ EL WI HLE +L V LA+++ MS R F Sbjct: 200 DLVIYLKRPGGQSQFSVHLSSQMNTHPTIRELQNWIMSHLEGELTVPRLAQRMAMSERNF 259 Query: 240 ARLYVAETGRTPARTVELMRLEAARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGV 299 AR++ E G +PA +E R EAARR LE +LPLK I ++G+G E+ +RRVF +++G+ Sbjct: 260 ARVFHREAGESPADFIERARFEAARRMLEGDKLPLKLIVGKTGFGTEEKMRRVFKKKVGL 319 Query: 300 SPGQYRERFAA 310 +P YRERF++ Sbjct: 320 TPKTYRERFSS 330 >gi|152981120|ref|YP_001354038.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 321 Score = 246 bits (629), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 132/311 (42%), Positives = 186/311 (59%), Gaps = 5/311 (1%) Query: 1 MNLLDLAGPMQALATTNR-LQAQDIYRLHVASAQGGAIVTSAGLPVLTQSLAELDQALAG 59 + LLD+AGP R L YR+ + + G +S+GL V + Q G Sbjct: 13 VQLLDIAGPADVFMEAARQLNDARAYRVQIIGTESGPFKSSSGLYVTPDATL---QTFRG 69 Query: 60 APLHTLVSPGGSQGDQFRLDPALVAWIRQRAPQAQRICSVCSGAFHLAEAGLLDGLRVTT 119 + TL+ G D + AW+++RA +RI SVC+GA L AGLL+G R+TT Sbjct: 70 G-IDTLMVAGSPDTDVITENSTRDAWLKKRAKSVRRIGSVCTGALILGMAGLLEGKRITT 128 Query: 120 HWDSVAQLQRRYPALQVDGEPIYIRQGRIWTSAGVTAGIDLTLALVEQDLGHAAAIATAR 179 HW S +L +P +VD + IY+R G ++TSAGVTAG+DL LA+VE+D G A+ AR Sbjct: 129 HWSSAEKLATMFPQTEVDPDCIYLRDGNLYTSAGVTAGMDLALAMVEEDHGRELALKVAR 188 Query: 180 QLVMFIKRPGGQSQFSAPLASQSAGAGRFVELHAWIAGHLEADLRVENLARQVNMSPRTF 239 ++VMF+KRPGGQSQFS+ LA+Q ++ A++ +L ADL V LA + MS R+F Sbjct: 189 EMVMFVKRPGGQSQFSSHLAAQHTEGSTIGQIQAYVLANLRADLSVPQLAERARMSERSF 248 Query: 240 ARLYVAETGRTPARTVELMRLEAARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGV 299 AR + AE+G TPA VE RL+ ARR +EE PLKRIA G+ +R+ F+R++ + Sbjct: 249 ARTFKAESGSTPASFVEAARLDQARRLIEEQSQPLKRIAQLCGFSNLDAMRKAFMRRISI 308 Query: 300 SPGQYRERFAA 310 P +YR RFA+ Sbjct: 309 GPAEYRRRFAS 319 >gi|152981032|ref|YP_001351912.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 345 Score = 223 bits (569), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 106/228 (46%), Positives = 150/228 (65%) Query: 82 LVAWIRQRAPQAQRICSVCSGAFHLAEAGLLDGLRVTTHWDSVAQLQRRYPALQVDGEPI 141 +V WI PQ R+ ++CSGAF LA AG+L+G R TTHW LQ ++PA++VD I Sbjct: 101 IVDWIVAVHPQINRLAALCSGAFFLASAGVLEGKRATTHWSVAQMLQEQFPAIEVDANAI 160 Query: 142 YIRQGRIWTSAGVTAGIDLTLALVEQDLGHAAAIATARQLVMFIKRPGGQSQFSAPLASQ 201 ++R G +WTSAGVTAGIDL LA VE+D G A+ A +V+++KRPGGQSQFS L SQ Sbjct: 161 FVRSGNLWTSAGVTAGIDLALAFVEEDFGRELALDVATDMVVYLKRPGGQSQFSTHLLSQ 220 Query: 202 SAGAGRFVELHAWIAGHLEADLRVENLARQVNMSPRTFARLYVAETGRTPARTVELMRLE 261 E+ WI +L+ L LA++ MS R FAR++ E G++ +E RLE Sbjct: 221 KTARPNIREVQNWILENLDQRLSSTTLAQKAMMSVRNFARVFQQEVGQSSQEFIEASRLE 280 Query: 262 AARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGVSPGQYRERFA 309 A++ L + LP+K+IA+ SG+ ++ ++RRVF ++LG++P YRERFA Sbjct: 281 LAKQLLADVALPIKKIAALSGFTDDDHMRRVFQKRLGITPKVYRERFA 328 >gi|152981075|ref|YP_001354771.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 322 Score = 221 bits (564), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 121/309 (39%), Positives = 186/309 (60%), Gaps = 7/309 (2%) Query: 4 LDLAGPMQALATTNRLQAQDI-YRLHVASAQGGAIVTSAGLPVLT-QSLAELDQALAGAP 61 LD++GP+ + NR + Y+L V + G + S GLP+ + +E+D Sbjct: 15 LDVSGPLDVFSEANRFLGHEQRYQLTVIGSTHGLMQCSNGLPIAAHKHYSEVDTGF---- 70 Query: 62 LHTLVSPGGSQGDQFRLDPALVAWIRQRAPQAQRICSVCSGAFHLAEAGLLDGLRVTTHW 121 ++ GG + Q D AL+ W+ A ++ + S+C+GAF LA AGLL+G +TTHW Sbjct: 71 -DLILVAGGPELPQQARDEALLGWLHSCALRSGKYGSICNGAFLLAHAGLLNGKTITTHW 129 Query: 122 DSVAQLQRRYPALQVDGEPIYIRQGRIWTSAGVTAGIDLTLALVEQDLGHAAAIATARQL 181 + A L R +PA VD + I+++ G ++TSAGVTAGIDL+L L+ Q+ G ++ A++L Sbjct: 130 NDAALLARMFPATTVDADRIFLQDGNLYTSAGVTAGIDLSLYLLSQESGAEVSLNVAKRL 189 Query: 182 VMFIKRPGGQSQFSAPLASQSAGAGRFVELHAWIAGHLEADLRVENLARQVNMSPRTFAR 241 V+F++R GGQSQFS L + + + ++ +L+ +L VE LAR V MSPR FAR Sbjct: 190 VVFMQRRGGQSQFSPYLTPYAEESSPVSMVQQYVLANLQQELSVEILARTVAMSPRNFAR 249 Query: 242 LYVAETGRTPARTVELMRLEAARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGVSP 301 ++V +T TPA +E RL+AAR LE + P+K+IA G+ +R VF+++LG++ Sbjct: 250 IFVRDTKITPAEFIESARLDAARALLEASNDPMKKIAYLCGFHNANQMRNVFVKRLGITA 309 Query: 302 GQYRERFAA 310 QYR FAA Sbjct: 310 MQYRANFAA 318 >gi|152981191|ref|YP_001354772.1| AraC family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 328 Score = 187 bits (474), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 106/309 (34%), Positives = 167/309 (54%), Gaps = 9/309 (2%) Query: 3 LLDLAGPMQALATTNRLQAQDI-YRLHVASAQGGAIVTSAGLPVLTQSLAELDQALAGAP 61 +LD+A P A A L + Y + + G I +S+GL ++ D+ + Sbjct: 16 MLDIAAPGDAFAEVKVLSNGECEYEILTIATTRGPIQSSSGLTIMP------DRTIFDPC 69 Query: 62 LH--TLVSPGGSQGDQFRLDPALVAWIRQRAPQAQRICSVCSGAFHLAEAGLLDGLRVTT 119 H TL+ PGG D L W+ + +RI ++C+G F L AG+++G VTT Sbjct: 70 PHFDTLIVPGGLGVFDILEDTTLTDWLAAQGEGCRRIGAICNGVFALGAAGMINGKTVTT 129 Query: 120 HWDSVAQLQRRYPALQVDGEPIYIRQGRIWTSAGVTAGIDLTLALVEQDLGHAAAIATAR 179 HW A+L + V+ + IY++ ++T+AGVTAGIDL+LAL+E+D G A+ A+ Sbjct: 130 HWMDAARLASMFRKATVEPDRIYVKDDSLYTTAGVTAGIDLSLALIEEDFGKQMALDVAK 189 Query: 180 QLVMFIKRPGGQSQFSAPLASQSAGAGRFVELHAWIAGHLEADLRVENLARQVNMSPRTF 239 L+++++R GGQSQFS L Q + ++ +L + + ++A ++ MS R Sbjct: 190 YLIVYLRRAGGQSQFSPLLEVQVKNDSPVAAVQNYVLNNLNVEHTLLSIADEMQMSARNL 249 Query: 240 ARLYVAETGRTPARTVELMRLEAARRALEETRLPLKRIASQSGYGEEQNLRRVFLRQLGV 299 +R++ ETG T V R++AARR LE T L L IA + G LRR+F ++LG+ Sbjct: 250 SRIFKQETGLTLMNFVNDARIDAARRYLESTDLGLTDIARRCGLTNAATLRRIFSKRLGI 309 Query: 300 SPGQYRERF 308 P YR+RF Sbjct: 310 GPSDYRQRF 318 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.133 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 738,521 Number of extensions: 30446 Number of successful extensions: 121 Number of sequences better than 1.0e-08: 11 Number of HSP's gapped: 123 Number of HSP's successfully gapped: 11 Length of query: 311 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 228 Effective length of database: 914,170 Effective search space: 208430760 Effective search space used: 208430760 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)