BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2569.p (318 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982816|ref|YP_001352236.1| LysR family transcriptional reg... 230 7e-62 gi|152982201|ref|YP_001352928.1| LysR family transcriptional reg... 139 2e-34 gi|152982198|ref|YP_001352220.1| LysR family transcriptional reg... 122 3e-29 gi|152982810|ref|YP_001352193.1| LysR family transcriptional reg... 100 8e-23 gi|152982861|ref|YP_001352810.1| LysR family transcriptional reg... 74 1e-14 >gi|152982816|ref|YP_001352236.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 302 Score = 230 bits (587), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 128/250 (51%), Positives = 161/250 (64%) Query: 7 SLDQLRVFVQVADSGSFLAAARKLARAQSAVSYAIATLEEQLGVLLFDRSGYRPQLTAPG 66 +LDQLRVFV V D GSF AAR+L R QS VSY IA LE QL V LFDRS +P LT G Sbjct: 8 TLDQLRVFVAVIDCGSFSRAARELHRTQSVVSYTIANLEAQLNVELFDRSKRKPTLTEAG 67 Query: 67 VALLADARQVLDHVDSLQVRASSYARGQELEVSLAVDVFFPTDCLVDLLQRFRLAFPEVT 126 ALLADAR V VD+++ RA + A+G E EVSLAVDV FP LV L+ F+ FP V Sbjct: 68 KALLADARTVGMKVDAMRARAKTLAQGLEAEVSLAVDVMFPNCRLVQALKAFQQEFPTVG 127 Query: 127 VRLEVEALGAVAERVIDGRSMLGILGTLPTTPPNLLRITLPSVQLVAVVAPDHPLAKVRG 186 +RL +EALGAV V + +GI G + L + +V V +PDHPL K+ G Sbjct: 128 LRLRIEALGAVMHLVGERVCQIGITGPMLDFSDTFQHQQLGHITMVPVASPDHPLGKMEG 187 Query: 187 RISEKLLQQQTQLVLSDRSELTARQDFSVHSRLTWRMSDLGTKHALLRAGMGWGNMPRHV 246 I ++ + TQLVL+DRS+LTA Q+F V + WR+ DLG KH LL G+GWG+MP + Sbjct: 188 IIPTEVARDHTQLVLTDRSQLTAGQNFGVIALRDWRLGDLGAKHMLLLNGLGWGSMPEEM 247 Query: 247 VQDDLDHGRL 256 ++ DL+ GRL Sbjct: 248 IRADLESGRL 257 >gi|152982201|ref|YP_001352928.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 304 Score = 139 bits (351), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 85/261 (32%), Positives = 136/261 (52%), Gaps = 4/261 (1%) Query: 5 RLSLDQLRVFVQVADSGSFLAAARKLARAQSAVSYAIATLEEQLGVLLFDRSGYRPQLTA 64 R SL+QL F+ VA++GSF A ARKL + QS VS AIA +E + + LFDR+ +P LTA Sbjct: 2 RFSLEQLETFLLVAETGSFSATARKLGKTQSTVSAAIANIEIDMNLSLFDRTTRKPTLTA 61 Query: 65 PGVALLADARQVLDHVDSLQVRASSYARGQELEVSLAVDVFFPTDCLVDLLQRFRLAFPE 124 G LL +A V++ +L+ A S E++LA+++ P + ++ +L F FP Sbjct: 62 AGQKLLIEAEAVMERCIALEAHADSLGDSNPAELTLAIEI--PYNTVMPVLSAFEAEFPF 119 Query: 125 VTVRLEVEALGAVAERVIDGRSMLGILGTLPTTPPNLLRITLPSVQLVAVVAPDHPLAKV 184 + + + G V+E V+ G LGI P P L L + +V + PDHPLAK+ Sbjct: 120 IDLTIRNPVYGDVSELVLKGEVDLGIAFAQPGYPSELNFTQLGRLVMVHITHPDHPLAKI 179 Query: 185 RGRISEKLLQQQTQLVLSDRSELTARQDFSVHSRLTWRMSDLGTKHALLRAGMGWGNMPR 244 ++S L L S + ++ + + W+ ++RAG+GW +PR Sbjct: 180 E-KVSFSDLHIHRHLAFSAHANKLPTTEY-LRATKVWQAESYLALIEMVRAGLGWATLPR 237 Query: 245 HVVQDDLDHGRLVSISTIHHP 265 ++ +L+ G LV + +P Sbjct: 238 QLIHRELEQGDLVELQLEAYP 258 >gi|152982198|ref|YP_001352220.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 305 Score = 122 bits (306), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 94/298 (31%), Positives = 145/298 (48%), Gaps = 14/298 (4%) Query: 6 LSLDQLRVFVQVADSGSFLAAARKLARAQSAVSYAIATLEEQLGVLLFDRSGYRPQLTAP 65 L+L+ +R+ + GSF AAA L R SA++Y++ LEE L VLLFDR G+R +LTA Sbjct: 3 LTLEAIRILDTIDRKGSFAAAAVALDRVPSALTYSVRKLEEDLDVLLFDRRGHRAKLTAA 62 Query: 66 GVALLADARQVLDHVDSLQVRASSYARGQELEVSLAVDVFFPTDCLVDLLQRFRLAFPEV 125 G LL + R +L D L+ R A G E+E+ + +D P + ++ L++ F Sbjct: 63 GQELLTEGRHLLRAADELEQRVKRTASGWEVELRIVLDSIIPFEKMLPLIREFDAEGSGT 122 Query: 126 TVRLEVEALGAVAERVIDGRSMLGILGTLPTTPPNLLRIT-------LPSVQLVAVVAPD 178 +R E L V E + G + L I + + P ++R + L V V VAP Sbjct: 123 QLRFSTEVLSGVWETLTSGAADLAI--GVSSDGPEIVRGSGDFRVRPLGEVDWVFAVAPG 180 Query: 179 HPLAKVRGRISEKLLQQQTQLVLSDRSE-LTARQDFSVHSRLTWRMSDLGTKHALLRAGM 237 HPLA + ++ +L+QQ + D L + + + T + D+ K AG+ Sbjct: 181 HPLAGMPDPLAPQLVQQYRAVAAGDSGRFLPSVSAGLLTGQATLTVPDIHEKLKAQLAGL 240 Query: 238 GWGNMPRHVVQDDLDHGRLVSISTIHHPPQGAELPIQCVYKPDHPAGPALSWWLDSLA 295 G G++PR L G L+ T+ P G LP Q ++ G L W+L+ LA Sbjct: 241 GCGHLPRKWAAPYLASGELIEKQTVETKPTG--LP-QYAWR-SSSRGKCLKWFLNKLA 294 >gi|152982810|ref|YP_001352193.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 294 Score = 100 bits (250), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 10/244 (4%) Query: 7 SLDQLRVFVQVADSGSFLAAARKLARAQSAVSYAIATLEEQLGVLLFDRSGYRPQLTAPG 66 ++D+++ FV A++GS AAAR+L +AQSAVS AIA LE LG LFDRS QLT G Sbjct: 4 TIDRMKQFVVTAEAGSISAAARRLGKAQSAVSTAIALLEADLGFELFDRSRRSVQLTPAG 63 Query: 67 VALLADARQVLDHVDSLQVRASSYARGQELEVSLAVDVFFPTDCLVDLLQRFRLAFPEVT 126 +L +AR++L + L RA S+A GQ+ +++LA+D P + L++ FP + Sbjct: 64 EVMLLEARELLRQAEGLDHRAQSFAAGQQPKLTLALDEALPYLAVGALVKEISQRFPSLE 123 Query: 127 VRLEVEALGAVAERVIDGRSMLGILGTLPTTPPNLLRITLPSVQLVAVVAPDHPLAKVRG 186 + VAE V R+ + + + + SV V HPL K++ Sbjct: 124 LSQLNGTATEVAEYVEKQRASVAFHFDRGPCSLSFAQKHIGSVAQGIFVGRGHPLTKIK- 182 Query: 187 RISEKLLQQQTQLVLSDRSELTARQDFS--VHSRLTWRMSDLGTKHALLRAGMGWGNMPR 244 +++++ L + QL++ D++ S WR + A++ G+GW +P Sbjct: 183 KVTQRDLAKHRQLLMH-------MDDYADPALSPSVWRSDSFYSIAAMVADGIGWAILPL 235 Query: 245 HVVQ 248 ++ + Sbjct: 236 NIAE 239 >gi|152982861|ref|YP_001352810.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 311 Score = 73.9 bits (180), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 66/277 (23%), Positives = 117/277 (42%), Gaps = 20/277 (7%) Query: 6 LSLDQLRVFVQVADSGSFLAAARKLARAQSAVSYAIATLEEQLGVLLFDRSGYRPQLTAP 65 S + L F V SF AA +L SAVSY I +E L V LF R+ +LT Sbjct: 5 FSEENLHTFTTVVKHASFRKAAEELGITTSAVSYTIKRMETYLEVTLFIRNTRNIELTES 64 Query: 66 GVALLADARQVLDHVDSLQVRASSYARGQELEVSLAVDVFFPT-DCLVDLLQRFRLAFPE 124 G A ++L +++ + +G E ++ + ++ T LLQ + FP Sbjct: 65 GFYFYRKAEELLHEFHAIKRGIYTMEQGIEAKIRICINSLLHTPRHTALLLQALKKHFPT 124 Query: 125 VTVRLEVEALGAVAERVIDGRS--MLGILGTLPTTPPNLLRITLPSVQLVAVVAPDHPLA 182 + + E V + +I+ +G GTL + + ++ V+AP HPLA Sbjct: 125 CQIAVTTEVYNGVWDAIINNNVDIAIGAPGTL-MEGGGIDYAEIGYIKWEFVLAPSHPLA 183 Query: 183 KVRGRISEKLLQQQTQLVLSDRSELTARQDFSVHSRLTW--------RMSDLGTKHALLR 234 + + I E L+ + + D + ++++ ++ W ++ D K Sbjct: 184 REQEPIPESQLRLFPAITVKDSA-------YTINKKVGWLLYGQEAIQVPDFNAKCQCQI 236 Query: 235 AGMGWGNMPRHVVQDDLDHGRLVSISTIHHPPQGAEL 271 G G G +P ++V + L G LV + +P Q + + Sbjct: 237 LGNGIGFLPDYLVAEHLQSGALVR-KQVQNPRQNSNM 272 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.391 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 591,173 Number of extensions: 20798 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 29 Number of HSP's gapped: 124 Number of HSP's successfully gapped: 29 Length of query: 318 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 235 Effective length of database: 914,170 Effective search space: 214829950 Effective search space used: 214829950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)