BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2564.p
         (394 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152982224|ref|YP_001353635.1| hypothetical protein mma_1945 [...   491   e-140

>gi|152982224|ref|YP_001353635.1| hypothetical protein mma_1945
           [Janthinobacterium sp. Marseille]
          Length = 368

 Score =  491 bits (1263), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 238/379 (62%), Positives = 295/379 (77%), Gaps = 12/379 (3%)

Query: 15  LNWQDGHTQQQLRWHSEAGNPAPKRVVLADDQIAADTAYRLACEGTGLLWRGDFQNARQL 74
           + W +    +  RW SE+G+ APKRVV+ADD++ AD+A+RLA EGT LLWRGD+QNARQL
Sbjct: 2   ITWNEAGADRSARWQSESGHAAPKRVVIADDKLTADSAFRLASEGTALLWRGDYQNARQL 61

Query: 75  LQALGRRVDRARERASTKSRGQPATSDSPAQAFHHHRQMQAQRARILGMLLIPLDPGFVV 134
           LQAL RR++R   +A+T          +P  AF+ HRQ Q+QRAR LGMLL+ +D  + +
Sbjct: 62  LQALARRIERKPRKAAT----------TPIDAFNFHRQAQSQRARTLGMLLVEVDAEYGI 111

Query: 135 PLRRAPDVQAACHQTYGAALAGEAFAVSLRELQGLIGAHEWRKKGVEIGALGARIHPWYG 194
           PLRRAPD++ AC++ YGA+     F VSLRE+ GLIGAHEWRK GVEI ALGARIHP+YG
Sbjct: 112 PLRRAPDIKLACNEAYGASTG--PFVVSLREILGLIGAHEWRKNGVEIAALGARIHPYYG 169

Query: 195 VFSPVRGEYVDLVAQAPLPATELAFDIGVGSGVLSAVLAQRGVRKIVATDMDPRALACAR 254
           VFSPVRGEY++L+A+APLP+ +LAFDIG G+GV++A+LAQRGV K+VAT+ D RALACA+
Sbjct: 170 VFSPVRGEYLNLIAEAPLPSKKLAFDIGTGTGVIAALLAQRGVEKVVATEQDVRALACAK 229

Query: 255 ENLQALGALEQVELQQADLFPPGRAPLIVCNPPWLPARPSSPIEQAVYDPESRMLLGFLN 314
           ENL  L   ++V++ +ADLFP G+APLIVCNPPW+PARPSS IE A+YDP+SRML GFLN
Sbjct: 230 ENLLRLDLRDRVQVLEADLFPAGKAPLIVCNPPWIPARPSSAIEYAIYDPDSRMLRGFLN 289

Query: 315 GLAAHLTPQGEGWLIMSDFAEHLGLRAPGMLAEAIAQAGLTVVARHDIKPRHGKAADRED 374
           GLAAHL  +GEGWLI+SD AEHLGLR    L + I  AGL V+AR D KP H +A D  D
Sbjct: 290 GLAAHLEAKGEGWLILSDLAEHLGLRTRDELLQMIDTAGLKVIARMDTKPVHPRATDVSD 349

Query: 375 PLHAARSKETTTLWRLRAR 393
           PLH ARS ETT+LWRL AR
Sbjct: 350 PLHQARSAETTSLWRLAAR 368


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.320    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,008,779
Number of extensions: 44870
Number of successful extensions: 168
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 166
Number of HSP's successfully gapped: 1
Length of query: 394
Length of database: 1,221,021
Length adjustment: 85
Effective length of query: 309
Effective length of database: 906,776
Effective search space: 280193784
Effective search space used: 280193784
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)