BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2562.p (465 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcr... 149 2e-37 gi|152982775|ref|YP_001354611.1| two-components system response ... 120 2e-28 gi|152982315|ref|YP_001354919.1| two component sensor histidine ... 89 8e-19 gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Jant... 80 4e-16 gi|152980724|ref|YP_001353975.1| two-component system sensor kin... 74 1e-14 >gi|152982852|ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 149 bits (377), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 128/438 (29%), Positives = 211/438 (48%), Gaps = 29/438 (6%) Query: 35 IAI-WISTQLAARQAYDRILAGSALQIAENTWYDHGEVNVDVPLAALSMLGTGD--HAIY 91 IAI ++ + A + +DR L +A+ +G+V + AA +L D + Y Sbjct: 85 IAITYLVAKSIANEPFDRALEDKVTVVAQQVKEVNGKVVTRLTGAATDILHADDIDNVYY 144 Query: 92 VVFDPRGRVIAGDAEF------RPEIPWSELEQGPLLRDGQYLGTPVRMAII------GR 139 V + G V+ GD E PWS + +R+ T VR+A I + Sbjct: 145 QVRNSFGDVVEGDMEIPLPKDVEAPPPWSTQFRYDFIRN-----TEVRIAYIYVDLHKTQ 199 Query: 140 RMPVNSPHP-WAVIVLAQTNNARMSFAQSLGSKALMVIVAMSVLTLVAAMFTLYQALAPL 198 P S P A++ +A+T + R + ++ + + LV F L + L PL Sbjct: 200 TAPQLSIEPRLALVQVAETLDKRSQLVNQIIKGVIVPEFIILPIALVLVWFALTRGLRPL 259 Query: 199 KRIEAAIRERDLNDLSPL-SLTVPAETHALVSAINAFMQRLEVHRATMRRVIGDAAHQLR 257 ++ IRER +DLSP+ S VP E LV ++N ++RL +R I DAAHQ++ Sbjct: 260 VELQQRIRERRPDDLSPIDSGYVPEEILPLVGSLNEMLERLSQSIKVQKRFIADAAHQMK 319 Query: 258 TPVTALVAQMELLANESNEDKRQRHLALLRERTGNLGALVNQLINHAMVQHRNDSS--LQ 315 TP+ + Q EL ++++ + + L L + + + ++NQL+ A +++ ++ LQ Sbjct: 320 TPLAGMRMQSELALRQTDQVEIHKSLEQLAKSSKSATRMINQLLALARAENQTPTTRPLQ 379 Query: 316 APIDLGELVRSQMTEVLSNRSRTPHDLALDVPSLPCLIRGDTIALGEAIKNILDNALQY- 374 P++L EL R + E + DL + P ++ GD I L E + N++DNAL Y Sbjct: 380 -PLELSELARDTVQEWVQTSFNKKIDLGFEQPDYHIMVNGDAIMLRELLNNLIDNALNYT 438 Query: 375 --GAPGLLQVRLDSDGQRHQLRFIDDGPGIAAKDWERLRKPFAP-RSENRMGASLGLSIV 431 G ++VR D + + L D GPGIA + +R+ + F N G+ LGL+IV Sbjct: 439 PAGGHATVRVRADEEARLAYLEVEDTGPGIAPHEHKRIFERFYRILGSNVEGSGLGLAIV 498 Query: 432 EEVMRAHGAEMRFAYLPN 449 E+ + HGAE+ PN Sbjct: 499 REIAQQHGAEIDILNNPN 516 >gi|152982775|ref|YP_001354611.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 470 Score = 120 bits (300), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 117/418 (27%), Positives = 197/418 (47%), Gaps = 14/418 (3%) Query: 34 LIAIWISTQLAARQAYDRILAGSALQIAENTWYDHGEVNVDV-PLAALSML-GTGDHAIY 91 ++ + + A YD L A ++ + G++ D+ P A ++L D Y Sbjct: 34 IVGSYFVVRHIANDVYDVELNEIAREMLLHVTRKDGQLGFDLSPDAERTLLLDKEDQVYY 93 Query: 92 VVFDPRGRVIAGDAEFRPEIPWSE-LEQG--PLLRDGQYLGTPVRMAIIGRRMPVNSPHP 148 + G++IAGD P +P + ++ G DG G VR+A++ R P+ P Sbjct: 94 AIHTTDGKLIAGD----PNLPAHQTIKSGRETAYYDGILQGQDVRIALL-RGKPLLEPPA 148 Query: 149 WAVIV-LAQTNNARMSFAQSLGSKALMVIVAMSVLTLVAAMFTLYQALAPLKRIEAAIRE 207 AV++ +A+T R ++L + ++ V + ++ + + L+PL++++ + Sbjct: 149 EAVMIQIAETQVKRDRHERALLIQLILPQVLLILIAGILIWRGVAHGLSPLRKLQQELAM 208 Query: 208 RDLNDLSPLSL-TVPAETHALVSAINAFMQRLEVHRATMRRVIGDAAHQLRTPVTALVAQ 266 R DLSP++ VP E LV A+N M R++ R I D AHQLRTPV L A Sbjct: 209 RSHLDLSPIAADNVPGEVEPLVGAVNDLMTRVDGVLGFQGRFIADTAHQLRTPVAGLKAH 268 Query: 267 MELLANESNEDKRQRHLALLRERTGNLGALVNQLINHAMVQHRNDSSLQAPIDLGELVRS 326 EL E++ + +R L L L LV+QL++ A + N + AP DL +L Sbjct: 269 AELALRETDPVQVKRALGHLYTSAERLSRLVSQLLSLARNEPNNVAVNFAPFDLNQLALR 328 Query: 327 QMTEVLSNRSRTPHDLALDVPSLPCLIRGDTIALGEAIKNILDNALQYG-APGLLQVRLD 385 E + + DL + L+ G+ + E I N++DNA++Y + G + VR+ Sbjct: 329 TAQEWVPLAYKKQIDLGFETAEQTVLLNGEAARVTEMINNLVDNAIRYTPSGGRVTVRVH 388 Query: 386 SDGQRHQLRFIDDGPGIAAKDWERLRKPFAPRSEN-RMGASLGLSIVEEVMRAHGAEM 442 D + L DDG I + +R+ + F N G+ LGL+IV E+ H A + Sbjct: 389 KDEEGAHLVVSDDGTRIPIDERQRIFERFHRLLGNHEEGSGLGLAIVHEIATLHNARI 446 >gi|152982315|ref|YP_001354919.1| two component sensor histidine kinase protein [Janthinobacterium sp. Marseille] Length = 427 Score = 88.6 bits (218), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 70/246 (28%), Positives = 116/246 (47%), Gaps = 27/246 (10%) Query: 223 ETHALVSAINAFMQRLEVHRATMRRVIGDAAHQLRTPVTALVAQMELLANESNEDKRQRH 282 E L ++ N R+E + ++ +A+H+LR+P+ + +EL+A ++ + R Sbjct: 201 EVGRLATSFNRSAARIEALVDAQKALLANASHELRSPLARIRMAVELMAADAQPEMRN-- 258 Query: 283 LALLRERTGNLGALVNQLINHAMVQHRNDSSLQA-----PIDLGELVRSQMTEVLSNRSR 337 E N+G L +QLI+ ++ R D++ A PIDL LV + + Sbjct: 259 -----ELKRNIGEL-DQLIDEILLASRLDATADATQVFEPIDLTALVAEECARI------ 306 Query: 338 TPHDLALDVPSLPCLIRGDTIALGEAIKNILDNALQYGAPGLLQVRLDSDGQRHQLRFID 397 D L+ S+ I GD L ++N+L+NA +YG + V L+ G + L+ D Sbjct: 307 ---DAQLETQSVE--IPGDARLLRRMVRNLLENARRYGNGTAIDVSLEKTGNKVVLQVCD 361 Query: 398 DGPGIAAKDWERLRKPF---APRSENRMGASLGLSIVEEVMRAHGAEMRFAYLPNGYFSV 454 GPG+ + E + PF SE G LGLS+V+++ RAHG E+ G Sbjct: 362 GGPGVPVAERENIFAPFYRLPGASEREGGVGLGLSLVQQIARAHGGEVVCTGREGGGSCF 421 Query: 455 VLDFPA 460 + PA Sbjct: 422 KVTLPA 427 >gi|152980826|ref|YP_001354043.1| heavy metal sensor kinase [Janthinobacterium sp. Marseille] Length = 466 Score = 79.7 bits (195), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 115/400 (28%), Positives = 179/400 (44%), Gaps = 43/400 (10%) Query: 87 DHAIYVVFDPRGRVI---AGDAEFRPEIPWSELEQGPLLRDGQYLGTPVRMAI--IGRRM 141 D I ++ D G +I D P I LE P+ R L T + I + Sbjct: 83 DRLIIMLKDVDGNIILHTNSDQGSLPTIAVLPLEMNPVPRSITLLWTSTGLTARAIAAQG 142 Query: 142 PVNSPHPWAVIVLAQTNNARMSFAQSLGSKALMVIVAMSVL--TLVAAMF---TLYQALA 196 V S VIV+A+T + RM KA V + M+ L TL+AA+ + + L Sbjct: 143 KVRSGEKI-VIVVARTASDRMELL-----KAYRVEIGMAALCGTLLAALLGYILVRRGLR 196 Query: 197 PLKRIE---AAIRERDLNDLSPLSLTVPAETHALVSAINAFMQRLEVHRATMRRVIGDAA 253 P++ I ++I L+ LS + P E H LV A NA + RL+ + + D A Sbjct: 197 PVRLIAGQASSITAHRLDTRLDLS-SAPQELHELVQAFNAMLDRLDGSFQRLSQFSADLA 255 Query: 254 HQLRTPVTALVAQME--LLANESNEDKRQRHLALLRERTGNLGALVNQLINHAMVQHR-- 309 H LRTP+ L+ Q + L+ S ED + ++ + E L +V ++ A V+H Sbjct: 256 HDLRTPLNNLMVQTQVALVQARSVEDYQGLLISNVEEYE-RLTRMVESMLFLARVEHTHV 314 Query: 310 --NDSSLQAPIDLGELVRSQMTEVLSNRSRTPHDLALDVPSLPCLIRGDTIALGEAIKNI 367 N S+L P +L + + E L++ + + L V + + D I L AI N+ Sbjct: 315 MLNKSALSLPEELQRI--ADYFEGLADEA----GVRLTVEA-GGRVYADAILLRRAIGNL 367 Query: 368 LDNALQY---GAPGLLQVRLDSDGQRHQLRFIDDGPGIAAKD----WERLRKPFAPRSEN 420 + NA+ Y GA +L+ + +DG + ++ G GIAA+ + R + A RS + Sbjct: 368 VANAIPYTPRGATIVLKGVMTADGA--TVSVVNPGAGIAAQHIPHVFNRFYRGDAARSNS 425 Query: 421 RMGASLGLSIVEEVMRAHGAEMRFAYLPNGYFSVVLDFPA 460 LGL+IV+ +M HG NG L FPA Sbjct: 426 ATSTGLGLAIVQSIMALHGGRATVTSEENGLTEFSLIFPA 465 >gi|152980724|ref|YP_001353975.1| two-component system sensor kinase of the phosphate regulon [Janthinobacterium sp. Marseille] Length = 443 Score = 74.3 bits (181), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 83/288 (28%), Positives = 128/288 (44%), Gaps = 36/288 (12%) Query: 200 RIEAAIRERDLNDL-------SPLSLTVPAETHALVSAINAFMQRLEV---HRAT----- 244 R+ IR D D PL+LT+ + L+ I F R ++ H AT Sbjct: 145 RVTNLIRNPDFIDYIILGRYDQPLTLTL--KDRKLIVQIIPFENRRQILVTHDATESDRI 202 Query: 245 --MRR-VIGDAAHQLRTPVTALVAQMELLANESN--EDKRQRHLALLRERTGNLGALVNQ 299 MRR I +A+H+LRTP+T + +E+ + N D R HL L+ E+ + LV Sbjct: 203 EMMRRDFIANASHELRTPLTVINGFLEIAQGQPNLDPDVRMSHLNLMIEQGKRMQNLVED 262 Query: 300 LINHAMVQHRNDSSLQAPIDLGELVRS--QMTEVLSNRSRTPHDLALDVPSLPCLIRGDT 357 ++ ++ + +++G L+R Q E LS R L ++ P I+G T Sbjct: 263 MLTLTRLESIDYPLRPEHVNIGNLLRQILQEAEALSG-GRHVISLTVEGPD----IQGST 317 Query: 358 IALGEAIKNILDNALQYGAPG-LLQVRLDSDGQRHQLRFIDDGPGIAAKDWERLRKPF-- 414 L A N++ NA++Y G + ++ G Q D G GI A+ RL + F Sbjct: 318 DELRSAFGNLVSNAVRYTPEGGRIDIKWQDAGNGPQFSVKDSGIGIRAEHIVRLTERFYR 377 Query: 415 --APRSENRMGASLGLSIVEEVMRAHGAEMRFAYLPNG--YFSVVLDF 458 RS G LGL+IV+ V+ HGA + P+ F+V D Sbjct: 378 VDKSRSRETQGTGLGLAIVKHVLLRHGAVLGIESQPDAGSTFTVKFDL 425 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,054,595 Number of extensions: 43887 Number of successful extensions: 178 Number of sequences better than 1.0e-08: 18 Number of HSP's gapped: 154 Number of HSP's successfully gapped: 18 Length of query: 465 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 378 Effective length of database: 899,382 Effective search space: 339966396 Effective search space used: 339966396 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)