BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2561.p (240 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981350|ref|YP_001354553.1| two-components system response ... 173 7e-45 gi|152981323|ref|YP_001354612.1| two components system response ... 172 2e-44 gi|152980825|ref|YP_001354044.1| heavy metal response regulator ... 157 7e-40 gi|152981318|ref|YP_001352484.1| response regulator of copper se... 147 6e-37 gi|152981423|ref|YP_001354086.1| two-components system response ... 146 9e-37 >gi|152981350|ref|YP_001354553.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 233 Score = 173 bits (439), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 96/218 (44%), Positives = 135/218 (61%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHASGRLG-EAFDLLILDVMLPHTDGF 59 MRILL ED + +A+ + L + G+ + +GA A L + FDLLILD+ LP G Sbjct: 1 MRILLAEDDSVLADGLTRSLRQSGYATDCVKNGAEADSVLSTQDFDLLILDLGLPKMSGL 60 Query: 60 GLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRSG 119 +LQ+LRAR PVL+LTA IE+RV+ LDLGADD++ KPF ELEAR+R L RR Sbjct: 61 EVLQRLRARNSRLPVLILTAGDSIEQRVKGLDLGADDFMAKPFALSELEARVRALTRRGA 120 Query: 120 GESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G ++ L D+ R A ++ Q ++L+ RE+ LLE++ R GR+ +K++L+D L Sbjct: 121 GGGPTVIKHGPLSYDQVGRIAYINDQMLDLSARELGLLEVLLQRSGRLVSKEQLVDHLCE 180 Query: 180 VDDTPNANTVEQYVARLRKKLAGAGFEIRTLRGLGYQL 217 + + N +E YV RLRKK+ G I T+RGLGY L Sbjct: 181 WSEEVSNNAIEVYVHRLRKKIEIGGLRIATVRGLGYCL 218 >gi|152981323|ref|YP_001354612.1| two components system response regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 172 bits (435), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 92/218 (42%), Positives = 137/218 (62%), Gaps = 1/218 (0%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHASGRL-GEAFDLLILDVMLPHTDGF 59 MRIL+VED A +A A+ LT+ G++V+ +G A L + + LL+LD+ LP DG Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYSVDHVDNGEDAHRALANDIYALLLLDISLPKMDGL 60 Query: 60 GLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRSG 119 +L++LR R PVL+LTA +++RV LDLGADDY+ KPFD E EAR+R L+RR Sbjct: 61 AVLRRLRERKSRLPVLILTARDTLDDRVAGLDLGADDYMTKPFDLPEFEARVRALIRRGQ 120 Query: 120 GESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 ++ +L L D ++ + QP+EL+ RE+ + E++ +R G++ K++++DRLF Sbjct: 121 FDAGKMLTHGGLRFDLEAHRLFYNDQPVELSVRELAVFEVLLSRQGQVVTKEQMIDRLFG 180 Query: 180 VDDTPNANTVEQYVARLRKKLAGAGFEIRTLRGLGYQL 217 D +N +E YV R RKKL IRT+RG+GY L Sbjct: 181 WGDDGGSNAIEVYVHRTRKKLEPYNINIRTVRGMGYLL 218 >gi|152980825|ref|YP_001354044.1| heavy metal response regulator [Janthinobacterium sp. Marseille] Length = 223 Score = 157 bits (396), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 92/220 (41%), Positives = 137/220 (62%), Gaps = 4/220 (1%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHA-SGRLGEAFDLLILDVMLPHTDGF 59 M+ILLVED E + L G V+W GA L E+++L+ILDVMLP DG+ Sbjct: 1 MKILLVEDEVKSGEYLRKGLREAGFVVDWARDGAEGLQLALQESYELVILDVMLPLLDGW 60 Query: 60 GLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRSG 119 LL++LR + + TPVL LTA E+E+RV+ L+LGADDYLVKPF F EL AR+R LLRR Sbjct: 61 QLLRELR-KVRDTPVLFLTARDEVEDRVKGLELGADDYLVKPFSFMELIARVRTLLRRGP 119 Query: 120 GESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 ++L+ A++ ID R T +G+ ++LT +E +LL ++A R G + ++ + +++ Sbjct: 120 VRESSLIEIADMQIDVMKRRVTRNGERLDLTAKEFSLLHLLAQRRGEVLSRSLIASQVWD 179 Query: 180 VDDTPNANTVEQYVARLRKKLAGAGFE--IRTLRGLGYQL 217 ++ + N V+ + RLR KL I+T+RG+GY L Sbjct: 180 MNFDSDTNVVDVAIRRLRAKLDDPHPRKLIQTVRGIGYVL 219 >gi|152981318|ref|YP_001352484.1| response regulator of copper sensing system [Janthinobacterium sp. Marseille] Length = 227 Score = 147 bits (371), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 88/222 (39%), Positives = 131/222 (59%), Gaps = 6/222 (2%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHASGR-LGEAFDLLILDVMLPHTDGF 59 M+IL+VED A+ I L G V+ +G + EA+DL++LDVMLP DG+ Sbjct: 1 MKILVVEDENKTADYIRQGLREAGFVVDVARNGLDGHHMAMNEAYDLVLLDVMLPDVDGW 60 Query: 60 GLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRSG 119 +++ LR G PVL LTA G +++RV+ L+LGAD YL+KPF F EL A +R LLRR Sbjct: 61 HIVKSLRDAGHQVPVLFLTARGSVDDRVKGLELGADSYLIKPFAFSELLAHVRTLLRRRN 120 Query: 120 GES-TNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLF 178 + ++ L A+L +D R AT GQ I LT +E LLE++A R G + + + +++ Sbjct: 121 VPAQSDQLQIADLVLDLTRRKATRMGQRIVLTNKEFALLELLARRRGEVLPRSLIASQIW 180 Query: 179 TVDDTPNANTVEQYVARLRKKLAGAGFE---IRTLRGLGYQL 217 ++ N N ++ + RLR K+ +E I T+RG+GY L Sbjct: 181 DMNFDSNTNVIDVAIRRLRAKM-DEPYEPKLIHTVRGMGYTL 221 >gi|152981423|ref|YP_001354086.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 221 Score = 146 bits (369), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 86/218 (39%), Positives = 123/218 (56%), Gaps = 3/218 (1%) Query: 1 MRILLVEDTADVAEAIVSHLTRIGHTVEWESHGAHASGRLG-EAFDLLILDVMLPHTDGF 59 MR LLVED DV + ++ L G V+W G A + E FD+ ILD+ LP DG Sbjct: 1 MRALLVEDDPDVGQHVLQALQEAGFVVDWSRDGNDAWFKGDVEEFDVAILDLGLPQLDGL 60 Query: 60 GLLQQLRARGQHTPVLMLTACGEIEERVRALDLGADDYLVKPFDFRELEARIRVLLRRSG 119 +L++ RA + PVL+L+A + E+V ++ GADDYL KPF+ EL AR R L+RR+ Sbjct: 61 SVLRRWRAAKRTFPVLILSARSDWSEKVEGIESGADDYLAKPFEVAELIARTRALVRRAA 120 Query: 120 GESTNLLHCANLCIDRKSRTATLDGQPIELTRREVTLLEIIAARPGRIFNKDELMDRLFT 179 G + +L C L +D + TAT+D QP+ L+ E +A + GR + EL + L+ Sbjct: 121 GHADPVLICGALTLDTRRMTATVDKQPVRLSPLEFRFFSYLAHQAGRPVSAGELAEHLYG 180 Query: 180 VDDTPNANTVEQYVARLRKKLAGAGFEIRTLRGLGYQL 217 + + N +E V R+R+K GA I T RG GY L Sbjct: 181 DSEGVDTNAIEALVLRMRRKF-GADL-IETRRGFGYML 216 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.138 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 516,436 Number of extensions: 21032 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 28 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 28 Length of query: 240 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 159 Effective length of database: 921,564 Effective search space: 146528676 Effective search space used: 146528676 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)