BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2560.p (263 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport sys... 326 1e-90 gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport sys... 192 1e-50 gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPa... 169 2e-43 gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bica... 168 3e-43 gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-bi... 167 7e-43 >gi|152980243|ref|YP_001354174.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 294 Score = 326 bits (835), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 160/253 (63%), Positives = 197/253 (77%), Gaps = 2/253 (0%) Query: 10 AIDPSRPLLEIDRVTLQYKTSDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGG 69 A+ S PLL++D V+L+Y+T + +V AT VSF+VH DR++LLGPSGCGKSTLLKA+ G Sbjct: 32 ALPASAPLLQVDDVSLEYRTRERVVRATHRVSFDVHQADRFVLLGPSGCGKSTLLKAVAG 91 Query: 70 YLQPTSGAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLHGRAAAE 129 ++ P G IRL G+ V PGPDR++VFQEFDQL PWKTV+QNV F L AS L + A E Sbjct: 92 FILPVEGEIRLDGKAVTAPGPDRIVVFQEFDQLSPWKTVKQNVIFPLLASRTLGRKEAEE 151 Query: 130 RAEYYIGKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKM 189 RA +Y+ KVGL+KF D +PH LSGGMKQRV+IAR +AM+P VLLMDEPFAALDALTRRKM Sbjct: 152 RALHYLAKVGLSKFSDVHPHQLSGGMKQRVAIARALAMQPRVLLMDEPFAALDALTRRKM 211 Query: 190 QDELLRLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNSIDPS--QLGTAA 247 Q+ELL+LWD+ FT+LFVTHSIEEA+ VG RI LL+PHPG++RAE+NS D S LG+ Sbjct: 212 QEELLQLWDEVHFTLLFVTHSIEEALVVGNRIALLSPHPGRMRAEINSHDFSLASLGSTE 271 Query: 248 QAELETRINDMLF 260 RI+ MLF Sbjct: 272 FQNTAQRIHHMLF 284 >gi|152981069|ref|YP_001354774.1| sulfonate/nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 265 Score = 192 bits (489), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 100/249 (40%), Positives = 150/249 (60%), Gaps = 4/249 (1%) Query: 16 PLLEIDRVTLQYKTSDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTS 75 P ++I V+ + V A + V+ ++ G+ L+G SGCGKSTLL+ + G+ +S Sbjct: 12 PAIDIKGVSKVFSIGGQTVQALREVNLTINKGEFVCLIGASGCGKSTLLRIMAGFETTSS 71 Query: 76 GAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLHGRAAAERAEYYI 135 G+ + G + P P+R MVFQ++ L PW TV++N+ F L E + YY Sbjct: 72 GSANMYGMPIDGPSPERGMVFQDYG-LFPWLTVKENIGFG-QRQRNLPKAKLEELSAYYT 129 Query: 136 GKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLR 195 VGL KF + YP LSGGMKQRV+IAR +A + +VLLMDEPF ALDALTR K+Q +LL Sbjct: 130 DMVGLTKFANYYPGQLSGGMKQRVAIARVLANDCEVLLMDEPFGALDALTREKLQQDLLE 189 Query: 196 LWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAE--LNSIDPSQLGTAAQAELET 253 +W+ T+ TV+FVTH++EEA+ + R++++T PG++ + L+ P + E+ Sbjct: 190 IWERTKVTVVFVTHAVEEAVMLSDRVVVMTAGPGRIEEDIKLDLARPRDITAVEFNEIRR 249 Query: 254 RINDMLFAH 262 I L +H Sbjct: 250 DITQYLTSH 258 >gi|152982290|ref|YP_001355227.1| ABC-type transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 246 Score = 169 bits (427), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 91/219 (41%), Positives = 135/219 (61%), Gaps = 5/219 (2%) Query: 17 LLEIDRVTLQYKTSDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTSG 76 ++E DR+ + + + V Q +S + G+ ++G SG GKSTLL+A G + P+SG Sbjct: 4 IIEFDRIAYLHPGASAPVI--QDLSLTIEAGEFVAIVGGSGVGKSTLLRAAAGLIAPSSG 61 Query: 77 AIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLHGRAAAERAEYYIG 136 ++LK ++ PG R V + +LLPW+TV NV + L G + R + + Sbjct: 62 DVQLKLPQL--PGRRRRAVVFQDGRLLPWRTVADNVAYGLETLG-ISADEQQSRIKQALQ 118 Query: 137 KVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLRL 196 GLA+F + +PH LSGG QRV IAR +A++PD+LLMDEPF+A+DALTRR +Q EL+R+ Sbjct: 119 LTGLAEFGERWPHQLSGGQVQRVGIARALAVQPDLLLMDEPFSAVDALTRRNLQAELIRI 178 Query: 197 WDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAEL 235 W TQ V+FVTH I+EA+ + R+++L P V L Sbjct: 179 WQATQSAVMFVTHDIDEAVFLADRVIVLGGSPATVVENL 217 >gi|152981696|ref|YP_001353350.1| ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 433 Score = 168 bits (426), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 97/246 (39%), Positives = 149/246 (60%), Gaps = 7/246 (2%) Query: 17 LLEIDRVTLQYKTSDSLVTAT-QSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTS 75 L+E+ V ++T+D ++ + V F + G+ LLG SG GKSTLL+ + G + S Sbjct: 6 LIELKGVDKSFQTADGTPSSVLEQVDFTLTEGEIVALLGKSGSGKSTLLRIMAGLIPADS 65 Query: 76 GAIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHASGRLHGRAAAERAEYYI 135 G+ +G+ ++ P MVFQ F L PW TV+QNVE L A G + +RA+ + Sbjct: 66 GSAMYRGKNIYGPVAGIAMVFQSF-ALFPWLTVQQNVELGLEAQG-VPPAEREKRADAML 123 Query: 136 GKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELLR 195 +GLA F + P LSGGMKQRV IARG+ PDVLLMDE F+ALD LT ++D++L Sbjct: 124 DLIGLAGFGGALPRELSGGMKQRVGIARGLVTGPDVLLMDEAFSALDVLTGETLRDDILE 183 Query: 196 LWDDTQF---TVLFVTHSIEEAIRVGTRILLLTPHPGQVRAELNSIDPSQLGTAAQAELE 252 +W++ + +L V+H+IEEA+ + RI++L+ PG++R+E+ ID + AE+ Sbjct: 184 MWEENRIPTKGILIVSHNIEEAVMMSDRIVVLSSSPGRIRSEIK-IDLPRPRNPDSAEVR 242 Query: 253 TRINDM 258 I+++ Sbjct: 243 ALIDEV 248 >gi|152980278|ref|YP_001352172.1| nitrate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 268 Score = 167 bits (423), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 92/221 (41%), Positives = 124/221 (56%), Gaps = 3/221 (1%) Query: 17 LLEIDRVTLQYKTSDSLVTATQSVSFNVHPGDRYILLGPSGCGKSTLLKAIGGYLQPTSG 76 ++I + + T + A +V+ V G+ L+G SGCGKSTLL I G Q T G Sbjct: 8 FIDIQHAEMSFSTKKGIFNALTNVNLTVSKGEFITLIGHSGCGKSTLLNLIAGLTQATGG 67 Query: 77 AIRLKGREVHEPGPDRMMVFQEFDQLLPWKTVRQNVEFALHA--SGRLHGRAAAERAEYY 134 + RE+ P P+R +VFQ LLPW T +NV A+ S R Sbjct: 68 MLLCGNREIAGPSPERAVVFQNHS-LLPWLTCYENVYLAVERVFSATESKAELKARTRAA 126 Query: 135 IGKVGLAKFIDSYPHMLSGGMKQRVSIARGMAMEPDVLLMDEPFAALDALTRRKMQDELL 194 + VGL+ P+ +SGGMKQRV IAR ++MEP VLLMDEPF ALDALTR +QDELL Sbjct: 127 LALVGLSHAEQKRPNEISGGMKQRVGIARALSMEPKVLLMDEPFGALDALTRAHLQDELL 186 Query: 195 RLWDDTQFTVLFVTHSIEEAIRVGTRILLLTPHPGQVRAEL 235 ++ T TV+ VTH ++EA+ + RI++LT P E+ Sbjct: 187 KIVAATGSTVVMVTHDVDEAVLLSDRIVMLTNGPSATIGEI 227 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 614,023 Number of extensions: 25070 Number of successful extensions: 254 Number of sequences better than 1.0e-08: 61 Number of HSP's gapped: 188 Number of HSP's successfully gapped: 63 Length of query: 263 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 182 Effective length of database: 921,564 Effective search space: 167724648 Effective search space used: 167724648 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)