BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2559.p (289 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980798|ref|YP_001354173.1| ABC-type sulfonate/nitrate tran... 324 4e-90 gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport sys... 94 1e-20 gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bica... 94 1e-20 gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bica... 90 1e-19 gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bica... 64 1e-11 >gi|152980798|ref|YP_001354173.1| ABC-type sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 294 Score = 324 bits (830), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 178/294 (60%), Positives = 220/294 (74%), Gaps = 5/294 (1%) Query: 1 MQTNL-----PFVRPEILVDPNPHATAEVQRPLSAFESLYRLGWLRKTVILLVLAAIWEV 55 M TNL P VRPE + P V+R L L+ GWLRK+VIL+VLA IWEV Sbjct: 1 MTTNLTGSLNPPVRPEYELKLKPFTELPVERELPLGSRLWAQGWLRKSVILVVLAVIWEV 60 Query: 56 YGRWLDNALLFPSFSETVQAFLSGIGSGVLLQRAAVSMQTLLVGYGLGILLAGLLTTVAI 115 RW DN LL P+F T QA + GI SG LL + +S+ LL GY +G+L A +LTT+A+ Sbjct: 61 VARWQDNELLLPTFIATAQALVEGISSGELLAKVGISLSVLLQGYAIGVLAAFILTTLAV 120 Query: 116 SSRIGNDLLETLTSMFNPLPAIALLPLALIWFGLGTGSIIFVLVHSVLWAVALNTHGGFR 175 S+++G DLL+TLTSM NPLPAIALLPLAL+WFG+G GS++FVLVHSVLW +ALNT+ GF+ Sbjct: 121 STQLGRDLLDTLTSMLNPLPAIALLPLALLWFGIGRGSLVFVLVHSVLWPMALNTYAGFQ 180 Query: 176 AVSNTLRMVGQNYGLRRFSLVKSILIPAAFPSILTGLKVGWAFAWRTLIAAELVFGVSSG 235 V +TLRM G+NYGLR V IL+PAA P+IL+GLK+GWAFAWRTLIAAELVFG SSG Sbjct: 181 GVPDTLRMAGRNYGLRGIPYVLQILVPAALPAILSGLKIGWAFAWRTLIAAELVFGASSG 240 Query: 236 AGGLGWYIFENRNQLETANVFSGLFFVIIIGLVVENLIFAQIEKRTIRRWGMQH 289 GGLGWYIF+NRN+L T VF+GL VI+IGL+VEN++F +EK T++ WGMQ Sbjct: 241 KGGLGWYIFQNRNELYTDKVFAGLATVILIGLMVENIVFRTLEKATVQHWGMQR 294 >gi|152980281|ref|YP_001352431.1| sulfonate/nitrate transport system permease protein [Janthinobacterium sp. Marseille] Length = 276 Score = 94.0 bits (232), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 79/268 (29%), Positives = 131/268 (48%), Gaps = 22/268 (8%) Query: 33 SLYRLGWLRKTV---ILLVLAAIWEVYGR--WLDNALLFPSFSETVQAFLSGIGSGVLLQ 87 S +R L+K V + ++L ++W++ + WL + +L F+ A+ + SG L Sbjct: 20 STWRASGLKKLVPWIVPVLLISVWQIASQLGWLSSRILPEPFAVAKAAWELAL-SGELWT 78 Query: 88 RAAVSMQTLLVGYGLGILLAGLLTTVAISSRIGNDLLETLTSMFNPLPAIALLPLALIWF 147 VS+ + +G L LL + + + LL+T M +PA+AL+PL ++WF Sbjct: 79 HVKVSLWRATTSFAVGGGLGLLLGLLTGTFKTAETLLDTTLQMIRNIPALALIPLVILWF 138 Query: 148 GLGTGSIIFVLVHSVLWAVALNTHGGFRAVSNTLRMVGQNYGLRRFSLVKSILIPAAFPS 207 G+ S IF++ V + V LNT G R+V L + ++YGL +SL + +++P A PS Sbjct: 139 GIEETSKIFLVAVGVFFPVYLNTFHGIRSVDKGLIEMAKSYGLSGWSLYRDVILPGALPS 198 Query: 208 ILTGLKVGWAFAWRTLIAAELVFGVSSGAGGLGWYIFENRNQLETANVFSGLFFVIIIGL 267 IL G++ W LI AE + S G+G+ R L+T V G+ ++G Sbjct: 199 ILVGVRFSLGLVWVLLIVAETI----SAQSGIGYMTMNAREFLQTDVVLVGILLYALLGK 254 Query: 268 VVENLIFAQIEKRTIR----RW--GMQH 289 A + RT+ RW G +H Sbjct: 255 ------LADVVSRTLEGYWLRWHPGYRH 276 >gi|152981359|ref|YP_001354307.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 296 Score = 94.0 bits (232), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/240 (30%), Positives = 121/240 (50%), Gaps = 9/240 (3%) Query: 36 RLGWLRKTVILLVLAAIWEVYGR--WLDNALLFPSFSETVQAFLSGIGSGVLLQRAAVSM 93 +LGWL + L VL + EV + W+ A L P SE VQ + + G+L+ +A S+ Sbjct: 45 KLGWLGWILPLAVLGFV-EVAAQLGWI-QARLLPPPSEIVQTLSALLEQGLLVHISA-SV 101 Query: 94 QTLLVGYGLGILLAGLLTTVAISSRIGNDLLETLTSMFNPLPAIALLPLALIWFGLGTGS 153 + GY +G +LA L S+ E +P++A +PL L+WFG+ Sbjct: 102 ARVFSGYAIGAVLAILFGLFVGLSKHAEAFFEPTFQALRAIPSLAWVPLLLLWFGIDETP 161 Query: 154 IIFVLVHSVLWAVALNTHGGFRAVSNTLRMVGQNYGLRRFSLVKSILIPAAFPSILTGLK 213 I ++ + + L G R V L +G+ YGL +L + I++PAA PS+ TGL+ Sbjct: 162 KITLIAIGAFFPIYLGLVSGIRNVDRKLIELGEIYGLSAPALARRIVLPAALPSLFTGLR 221 Query: 214 VGWAFAWRTLIAAELVFGVSSGAGGLGWYIFENRNQLETANVFSGLFFVIIIGLVVENLI 273 G + AW L+AAEL+ + G+G+ + + R V + +F + I+G + + L+ Sbjct: 222 NGLSLAWMFLVAAELI----AATKGIGYLLTDGRETSRPDVVLAAIFLLAILGKLTDGLL 277 >gi|152981435|ref|YP_001354775.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 276 Score = 90.1 bits (222), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 14/193 (7%) Query: 97 LVGYGLGILLAGLLTTVAISSRIGNDLLETLTSMFNPLPAIALLPLALIWFGLGTGSIIF 156 LVG LG+L+ + ++ DLL+ + P+P A LPL++I+FG+G + IF Sbjct: 96 LVGIPLGLLIGRI--------KVIRDLLDPTLQLLRPVPVTAWLPLSMIFFGIGPNAAIF 147 Query: 157 VLVHSVLWAVALNTHGGFRAVSNTLRMVGQNYGLRRFSLVKSILIPAAFPSILTGLKVGW 216 ++ + + NT G +AV N L G SL + +++PAA PSIL GL++G Sbjct: 148 LVFLGAFYPIVFNTTFGVKAVDNRLFEAALMLGCNGSSLFRQVVLPAAMPSILNGLRLGH 207 Query: 217 AFAWRTLIAAELVFGVSSGAGGLGWYIFENRNQLETANVFSGLFFVIIIGLVVENLIFAQ 276 FAW ++ E+ GV GLG I + R T V +G+ + I+G + ++ A Sbjct: 208 GFAWILIVVGEMT-GVPE---GLGAVIMDGRMLSRTDLVIAGMVVIGIVGYSTDRILVAI 263 Query: 277 IEKRTIRRWGMQH 289 + +W QH Sbjct: 264 --NNYLLKWSPQH 274 >gi|152981719|ref|YP_001355226.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Janthinobacterium sp. Marseille] Length = 255 Score = 63.9 bits (154), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/245 (27%), Positives = 105/245 (42%), Gaps = 18/245 (7%) Query: 44 VILLVLAAIWEVYG--RWLDNALLFPSFSETVQAFLSGIGSGVLLQRAAVSMQTLLVGYG 101 V+L VL +W+ G W++ L P + AF+ +G LL S+ G G Sbjct: 19 VVLFVL--LWKASGFFAWVNPGTL-PDPFKLPHAFMQEWTAGRLLPAIGSSLVHYFWGLG 75 Query: 102 LGILLAGLLTTVAISSRIGNDLLETLTSMFNPLPAIALLPLALIWFGLGTGSIIFVLVHS 161 LG L A + R L L + P+P +A + A+ WF + FV+ Sbjct: 76 LGTLFGIAFGLAAATIRPFELLQAYLIRILRPIPPLAWVVFAIAWFKVSHAGAAFVISIG 135 Query: 162 VLWAVALNTHGGFRAVSNTLRMVGQNYGLRRF-SLVKSILIPAAFPSILTGLKVGWAFAW 220 V W T R + + +++G + SI +PA P L G++ G AW Sbjct: 136 VFWINYYATASAVRNIDPRFYELARSFGQGSYWRRAVSITLPAIAPGTLAGIRTGIGQAW 195 Query: 221 RTLIAAELVFGVSSGAGGLGWYIFENRNQLETANVFSG-LFFVIIIGLV--VENLIFAQI 277 TLIAAEL+ G G+G + N + + +++ I LV + +LI+ I Sbjct: 196 MTLIAAELL-----GVPGMG----QEMNAAAGVGAYEAVVIYMLAISLVYAISDLIYVLI 246 Query: 278 EKRTI 282 EKR + Sbjct: 247 EKRVL 251 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.327 0.142 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 601,812 Number of extensions: 22794 Number of successful extensions: 125 Number of sequences better than 1.0e-08: 6 Number of HSP's gapped: 120 Number of HSP's successfully gapped: 6 Length of query: 289 Length of database: 1,221,021 Length adjustment: 82 Effective length of query: 207 Effective length of database: 917,867 Effective search space: 189998469 Effective search space used: 189998469 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 129 (54.3 bits)