BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2558.p
         (338 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980797|ref|YP_001354175.1| ABC-type sulfonate/nitrate tran...   226   1e-60
gi|152981578|ref|YP_001354306.1| ABC-type nitrate/sulfonate/bica...    63   3e-11

>gi|152980797|ref|YP_001354175.1| ABC-type sulfonate/nitrate
           transport system substrate-binding protein
           [Janthinobacterium sp. Marseille]
          Length = 347

 Score =  226 bits (576), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 127/343 (37%), Positives = 200/343 (58%), Gaps = 13/343 (3%)

Query: 2   KRR----SFTSLMIASALALSGASGAARAEAQEVRISHGYGLLYLPLMVMRDQGLVEKHA 57
           +RR    +F+ + +A+AL LS     ARAE + + I+  +G+ YL L V+RD+ L+EK+ 
Sbjct: 12  RRRWIGAAFSVIAVATAL-LSALP--ARAEGK-ISIAQQFGIGYLILDVVRDRQLIEKYG 67

Query: 58  KAMGLGDVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGLGA 117
           K  G+ D++  W  + G   +N+A+LAG LD+   G P  +T+W +  G  +  V  + A
Sbjct: 68  KQQGI-DIQVDWASISGATAMNEALLAGALDVVSAGVPPMLTMWDRTRG--KQNVKAVAA 124

Query: 118 LSTSPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLDPL 177
           L + P +L +NNP VK+LKD + KD+IA+P       +  LQ+  A+ FG +N+ K D +
Sbjct: 125 LGSLPNYLLSNNPAVKTLKDLSDKDRIAVPAAGVGFQSRTLQIETARQFGKDNFKKFDNI 184

Query: 178 TVSLSHPEAMASLVSGKTEITAHFTSPPFSYQE-AKAPGITRVLNSTDVLGH-ITIDVVF 235
           +VSL HP+A A+L++G +EI  HF+S PF YQ  A    + +V++S D+LG   T +V++
Sbjct: 185 SVSLPHPDATAALIAGGSEINTHFSSAPFYYQALAANSNVHKVISSYDILGGPATFNVLY 244

Query: 236 ALKSFTDKNPKLTQAVMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVEQMLADPGT 295
             + F D+NPK  +A  AA  EA   I  ++  AA+ F+R+ K KL  E V +++ DP  
Sbjct: 245 TTQKFHDENPKTYKAFYAALVEAAQLIKADKAKAADTFIRIQKSKLSPELVRKIVEDPEN 304

Query: 296 EFSTTPVDIMQYVVFMSKAGTIKTKPAVWNEMFVPAFKERKGS 338
           +F+ +P     Y   + K G IK K A W + F      + GS
Sbjct: 305 DFTVSPHRTFVYADELQKLGVIKNKAASWKDYFFEEAYAQPGS 347


>gi|152981578|ref|YP_001354306.1| ABC-type
           nitrate/sulfonate/bicarbonate transport systems,
           periplasmic component [Janthinobacterium sp. Marseille]
          Length = 332

 Score = 62.8 bits (151), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 77/292 (26%), Positives = 130/292 (44%), Gaps = 26/292 (8%)

Query: 1   MKRRSF---TSLMIASALALS-GASGAARAEAQEVRISHGYGLLYLPL-MVMRDQGLVEK 55
           M RR F   T+L+  + L+ S   S  A A  +E+R+ + Y   Y P  +V++  G +E+
Sbjct: 1   MDRRFFIKNTALLTLAGLSTSVSLSAHAAAAPEEIRLDYAY---YSPTSLVLKHFGWLEE 57

Query: 56  HAKAMGLGDVKTKWVLLDGGNVINDAMLAGNLDIAGTGAPGFVTLWSKAHGIPRSEVVGL 115
             K+ G   +K KW L  G N   + + A ++D   T   G   + S+A+G P   V   
Sbjct: 58  QVKSSG---IKVKWTLSQGSNRALEYLSANSIDFGSTA--GLAAVLSRANGNPIKSVYVY 112

Query: 116 GALSTSPLWLNTNNPNVKSLKDFTPKDKIAIPGIKTSLSAVLLQMAAAKTFGIENYAKLD 175
                + L +  ++P +K++ D   K   A  G    L   LL     +T  +    K D
Sbjct: 113 SRPEWTALLVPKDSP-IKTVADLKGKKIAATKGTDPYL--FLL-----RTLKVNGLKKSD 164

Query: 176 PLTVSLSHPEAMASLVSGKTEITAHFTSPPFSYQEAKAPGITRVLNSTDVLGHITIDVVF 235
              V L H +  A+L SG+ +  A    P  +  E +A   +R+L     +   T   + 
Sbjct: 165 VEIVHLQHADGRAALESGRIDAWAGL-DPHMASSELQAG--SRLLYRN--VAFNTYGFLN 219

Query: 236 ALKSFTDKNPKLTQAVMAAQEEANAYIAKNRKGAAEIFLRVSKLKLPQEEVE 287
             + F  K P+  + V+ A E A  +I  N + A++I    +K+ L   +V+
Sbjct: 220 VTEDFAKKYPEQVKQVLQAYERARLWILANPREASQIQADEAKISLAVAKVQ 271


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.131    0.370 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 737,138
Number of extensions: 29697
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 107
Number of HSP's successfully gapped: 2
Length of query: 338
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 254
Effective length of database: 910,473
Effective search space: 231260142
Effective search space used: 231260142
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)