BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2547.p
         (742 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981102|ref|YP_001355382.1| isocitrate dehydrogenase [Janth...   973   0.0  

>gi|152981102|ref|YP_001355382.1| isocitrate dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 742

 Score =  973 bits (2516), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 469/735 (63%), Positives = 568/735 (77%)

Query: 8   IIYTLTDEAPYLATHSLLPIVKKFTAPAGIDVVESDISVAARILAEFPEFLTDEQKVPDN 67
           IIYTLTDEAP LAT+SLLPIV+ FT  +GI V   DIS+AARILA FP++L D+QK+   
Sbjct: 7   IIYTLTDEAPALATYSLLPIVEAFTRTSGIAVETRDISLAARILAAFPDYLDDKQKIAPA 66

Query: 68  LAALGALTQDPNANIIKLPNISASILQLQAAIRELQARGYKLPDYPENPSTEEEKALQKR 127
           LA LG L     ANIIKLPNISASI QL+AAI+ELQ +GYKLP YP+  ++ EEK ++ R
Sbjct: 67  LAELGELATREEANIIKLPNISASIPQLKAAIKELQGQGYKLPSYPDEANSAEEKDVKAR 126

Query: 128 YAKITGSAVNPVLREGNSDRRAPNAVKNYARKHPHSMAKWSMASRTHVAHMHGGDFYAGE 187
           Y KI GSAVNPVLREGNSDRRAP +VKNYARKHPH M  W+  S+ HVAHM  GDFY  E
Sbjct: 127 YDKIKGSAVNPVLREGNSDRRAPLSVKNYARKHPHKMGAWAKDSKAHVAHMDNGDFYGSE 186

Query: 188 KSLTLDKAVDVKMDLVTKSGETIVLKPKLSLQAGEIIDSMFMSKKALCAYYEEQMQDAFE 247
           KS  +++A +VK++L    G   VLK K +++AGEIID+  MS+ AL ++ E Q+ DA  
Sbjct: 187 KSALIEQAGNVKIELFAADGSKTVLKEKTAVKAGEIIDAAVMSRNALRSFIEAQIADAKA 246

Query: 248 TDLLLSVHVKATMMKVSHPIVFGHAVRTYYKDTFTKHAKLFAEIGVNPNNGMSGVYEKIN 307
            ++L SVH+KATMMKVS PI+FGH V  +YKD  +KHA++  ++G +PNNG+  +Y +I 
Sbjct: 247 KNVLFSVHLKATMMKVSDPIIFGHVVAVFYKDALSKHAEVLKQVGFDPNNGIGDLYARIK 306

Query: 308 TLPEDKKAEVLADLKADEAKRPRLAMVDSAKGITNLHAPNDVIVDASMPAMIRAGGKMWN 367
           TLP D +A ++AD++A   +R  LAMV+S KGIT LH P+DVIVDASMPAMIR  GKMWN
Sbjct: 307 TLPADTQAAIVADVEAAYTQRASLAMVNSDKGITTLHVPSDVIVDASMPAMIRDSGKMWN 366

Query: 368 AAGKTEDTKALLPESTFARIYQEMINFCKTNGAFDPTTMGTVPNVGLMAQKAEEYGSHDK 427
           AAG  +D KA++P+  +A IYQ +I+ CK NG FDP TMG+VPNVGLMAQ AEEYGSHDK
Sbjct: 367 AAGDLQDAKAVIPDRCYADIYQVVIDDCKQNGPFDPVTMGSVPNVGLMAQAAEEYGSHDK 426

Query: 428 TFEIAQAGVARIVTLDGQVLLEQNVEEGDIWRMCQVKDAAVRDWVKLAVTRARLSGMPAV 487
           TF++A  GV R+    G+VLLEQ VE GD++RMCQ KDA ++DWVKLAV RAR +G PAV
Sbjct: 427 TFQLATDGVVRVTDESGKVLLEQKVEAGDLFRMCQTKDAPIQDWVKLAVNRARATGTPAV 486

Query: 488 FWLDPYRPHEAELIKKVNTYLKDHDLTGADIQIMSQVRAMRYTLERVIRGLDTISVTGNI 547
           FWLD  R H+A++I KVN YLKDHD  G D++I+S V A +++++R+  G DTISVTGN+
Sbjct: 487 FWLDAKRAHDAQIIAKVNHYLKDHDTKGLDLRILSPVEATKFSIDRIRAGKDTISVTGNV 546

Query: 548 LRDYLTDLFPIMELGTSAKMLSIVPLMAGGGMFETGAGGSAPKHVQQLVGENHLRWDSLG 607
           LRDYLTDLFPIMELGTSAKMLSIVPLMAGGG+FETGAGGSAPKHVQQ V E+ LRWDSLG
Sbjct: 547 LRDYLTDLFPIMELGTSAKMLSIVPLMAGGGLFETGAGGSAPKHVQQFVEEDFLRWDSLG 606

Query: 608 EFLALAVSIEEVGIKTGNNKAKILAKTLDAATGKLLDNNKSPSPKTGELDNRGSHFYLAL 667
           EF+ALA S+E +G   GN KA +LAKTLD ATGK LD +KSP+ K G LDNRGSHFYLAL
Sbjct: 607 EFMALAASLEHLGNAYGNAKALVLAKTLDQATGKFLDTDKSPARKVGGLDNRGSHFYLAL 666

Query: 668 YWAQELAAQKDDAELAKQFAPLAKALADNEQKIVEELNSVQGKQVDIGGYYLPDREKTFA 727
           YWAQ LA Q +D +L  QF  LAKALADNE  IV EL + QGK VDIGGYY PD  KT  
Sbjct: 667 YWAQALAEQTEDPDLQAQFKGLAKALADNEATIVAELKAAQGKPVDIGGYYHPDVSKTSK 726

Query: 728 VMRPSATLNQALESV 742
            MRPS TLNQAL+++
Sbjct: 727 AMRPSNTLNQALDAI 741


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.316    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,662,190
Number of extensions: 67535
Number of successful extensions: 198
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 198
Number of HSP's successfully gapped: 1
Length of query: 742
Length of database: 1,221,021
Length adjustment: 90
Effective length of query: 652
Effective length of database: 888,291
Effective search space: 579165732
Effective search space used: 579165732
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 133 (55.8 bits)