BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2546.p (428 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Jan... 172 3e-44 gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Jan... 168 6e-43 gi|152982732|ref|YP_001353683.1| major facilitator transporter [... 151 7e-38 gi|152982376|ref|YP_001354943.1| major facilitator transporter [... 149 3e-37 gi|152980800|ref|YP_001354171.1| major facilitator superfamily s... 140 1e-34 >gi|152982759|ref|YP_001354082.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 437 Score = 172 bits (437), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 128/417 (30%), Positives = 219/417 (52%), Gaps = 15/417 (3%) Query: 7 SQSKFSTVLRVTS-GNFMEMFDFFLFGFYATHI-SKAFFPSDNDFASLMLTFMTFGAGFL 64 +SK T+ +S G +E +DF ++G A + +K FFP+ + + T+ GF Sbjct: 17 KKSKIGTIAAASSIGTIIEWYDFLIYGMAAALVFNKLFFPNVSPVIGTLAALGTYAVGFF 76 Query: 65 MRPLGAIILGAYVDRVGRRQGLIVTLALMALGTMLIAFVPSYASIGALAPMLVLIGRLLQ 124 RPLG I G + DRVGR+ L++T+ +M +GT+LI +P+Y IG AP+L+++ R +Q Sbjct: 77 ARPLGGAIFGHFGDRVGRKSMLLLTMFIMGIGTVLIGCLPTYEHIGIWAPVLLIVLRFIQ 136 Query: 125 GFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQVAIIVAAAIGYALSTTLTPAQVGD 184 G G E GG ++ + E A +GFY S + +++A + +A+ + L A Sbjct: 137 GVGLGGEWGGAALMVLEHAPKHRRGFYGSLVQVGFPLGLVLATGV-FAIVSKLPEADFLS 195 Query: 185 WGWRIPFFIGCLIVPVLFVIRRSLQETEEF--MRRKHRPSTGQIFRSMIENWKLVIAGMM 242 WGWRIPF + ++V V +VIR ++E+ F M+ K+ S + ++++N + + + Sbjct: 196 WGWRIPFLLSIVLVVVGYVIRSKVEESPIFLQMKAKNELSKQPVLDAILKNPRAFLTAIG 255 Query: 243 LVSMTTVSF-YLITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLPIMGALSDRIGRR 301 L ++ VS+ Y++TV+ N L+L L L L I +P+ G LSD++GRR Sbjct: 256 L-KISEVSWVYILTVFIVVHATNNLQLPKSLILDGILYAALVEVITIPLFGLLSDKVGRR 314 Query: 302 PILVVFTVLTILTAYPAVNWL-VHDATFAKMLMV---ELWLSFLYASYNGAMVVALTEVM 357 P+ + + T+ A+P L D+ +M+ L F++A E+ Sbjct: 315 PMYIWGALFTVALAFPLFILLDTRDSAIIIGVMIVALSLGHGFMFAPE----ATYFPELF 370 Query: 358 PADVRTAGFSLAYSLATAVFGGFTPAIATGLIQATGDKAAPGIWMSTAAVCGLIATL 414 A+VR +G +L + +A A+ GG +P IATGL+ G + + A L+A + Sbjct: 371 GANVRYSGATLGFQVAAAIGGGLSPIIATGLMAYFGGTTGVSVMLILLAAITLVAAI 427 >gi|152982339|ref|YP_001352576.1| shikimate transporter ShiA [Janthinobacterium sp. Marseille] Length = 439 Score = 168 bits (426), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 119/395 (30%), Positives = 200/395 (50%), Gaps = 6/395 (1%) Query: 6 SSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHI-SKAFFPSDNDFASLMLTFMTFGAGFL 64 Q S V G +E +DF ++G A + +K FFP+ + + ++ GFL Sbjct: 17 EKQKIRSVVFASAIGTIIEWYDFLIYGMAAALVFNKLFFPNIDPLLGTLAALGSYAVGFL 76 Query: 65 MRPLGAIILGAYVDRVGRRQGLIVTLALMALGTMLIAFVPSYASIGALAPMLVLIGRLLQ 124 RPLG I G Y DR+GR+ L++TLALM +GT LI +P+Y IG AP+L++ R++Q Sbjct: 77 ARPLGGAIFGHYGDRIGRKSILMITLALMGIGTFLIGLLPTYGQIGIWAPILLITLRIIQ 136 Query: 125 GFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQVAIIVAAAIGYALSTTLTPAQVGD 184 G G E GG +V + E + +GFY S + +++A + ++ + + A + Sbjct: 137 GIGLGGEWGGAAVMVLEHSPKNRRGFYGSLVQVGFPLGLVIATLV-FSFVSKMPEADILS 195 Query: 185 WGWRIPFFIGCLIVPVLFVIRRSLQETEEFMRRKHRP--STGQIFRSMIENWKLVIAGMM 242 WGWRIPF + +++ V IR++++E+ F K R S + ++++ + + Sbjct: 196 WGWRIPFLLSAVLIIVGIFIRKNVEESPVFEDMKMRKALSKSPVMDVILKHPRTFFIAIG 255 Query: 243 LVSMTTVSF-YLITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLPIMGALSDRIGRR 301 L ++ VS+ Y++TV+ + L L L L + + +P+ G LSD IGRR Sbjct: 256 L-KISEVSWVYMLTVFMVVYATTTLGLPKSLILEAILIAAMVEIVTIPLFGYLSDVIGRR 314 Query: 302 PILVVFTVLTILTAYPAVNWLVHDATFAKMLMVELWLSFLYASYNGAMVVALTEVMPADV 361 P+ + + TI A+P ++ A +L V + +S + E+ A+V Sbjct: 315 PLYFIGALFTIAFAFPLFLFMEMRTPEAVILTVVVAMSMGHGLMFAPEATYFPELFGANV 374 Query: 362 RTAGFSLAYSLATAVFGGFTPAIATGLIQATGDKA 396 R +G S + +A A+ GG +P IAT L G A Sbjct: 375 RYSGASFGFQVAAAIGGGLSPIIATALAGYLGGTA 409 >gi|152982732|ref|YP_001353683.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 553 Score = 151 bits (382), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 104/332 (31%), Positives = 173/332 (52%), Gaps = 6/332 (1%) Query: 2 TTSTSSQSKFSTVLRVTS-GNFMEMFDFFLFGFYATHISKAFFPSDNDFASLMLTFMTFG 60 TT S + V+ +S G E +DF+L+G A I+K FF + + + + F Sbjct: 6 TTDRSITPEERKVIFASSLGTVFEWYDFYLYGSLAAIIAKQFFAGTDPNTAFIFALLAFA 65 Query: 61 AGFLMRPLGAIILGAYVDRVGRRQGLIVTLALMALGTMLIAFVPSYASIGALAPMLVLIG 120 AGF++RP GAI+ G D +GR+ +VT+ +M T ++ +P+YASIG AP++++I Sbjct: 66 AGFIVRPFGAIVFGRLGDMIGRKYTFLVTIVIMGTSTFIVGLLPNYASIGIAAPIILIIL 125 Query: 121 RLLQGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQVAIIVAAAIGYALSTTLTPA 180 R+LQG + G E GG + Y+AE A G +G + SW + + + ++ + T + Sbjct: 126 RILQGLALGGEYGGAATYVAEHAPHGKRGAFTSWIQTTATMGLFMSLLVILGTRTAMGEE 185 Query: 181 QVGDWGWRIPFFIGCLIVPVLFVIRRSLQETEEFMRRKH--RPSTGQIFRSMIE--NWKL 236 DWGWRIPF + ++ + IR S+ E+ F++ K + S + + + N K+ Sbjct: 186 AFADWGWRIPFLVSVFLLGISVWIRLSMNESPAFLKMKSEGKASKAPLTEAFAKWGNLKI 245 Query: 237 VIAGMM-LVSMTTVSFYLITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLPIMGALS 295 VI ++ L + V +Y Y F LK+ + I+ L + I G+LS Sbjct: 246 VILALIGLTAGQAVVWYTGQFYALFFLTQTLKVDGPTANILIAASLLLATPFFVIFGSLS 305 Query: 296 DRIGRRPILVVFTVLTILTAYPAVNWLVHDAT 327 D+IGR+PI++ ++ LT +P N L H A Sbjct: 306 DKIGRKPIIMAGCLIAALTYFPIFNALTHYAN 337 >gi|152982376|ref|YP_001354943.1| major facilitator transporter [Janthinobacterium sp. Marseille] Length = 439 Score = 149 bits (376), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 112/374 (29%), Positives = 190/374 (50%), Gaps = 12/374 (3%) Query: 20 GNFMEMFDFFLFGFYATHI-SKAFFPSDNDFASLMLTFMTFGAGFLMRPLGAIILGAYVD 78 G +E FDF+++ A + FFPS N A ++ + TF F RP+G+ + G Y D Sbjct: 24 GTTIEFFDFYIYATAAVLVFPTLFFPSSNPTAGMLQSLATFAIAFFARPVGSAVFGHYGD 83 Query: 79 RVGRRQGLIVTLALMALGTMLIAFVPSYASIGALAPMLVLIGRLLQGFSAGVELGGVSVY 138 R+GR+ L+ L M + T++I +P+Y +IG LAP+L+ + R QG G E GG + Sbjct: 84 RIGRKATLVAALLTMGISTVVIGLLPTYEAIGTLAPLLLALCRFGQGLGLGGEWGGAVLL 143 Query: 139 LAEMATPGNKGFYVSWQSASQQVAIIVAAAIGYALSTTLTPAQVGDWGWRIPFFIGCLIV 198 E A PG +Y + + ++ I LS TLT Q +GWRIPF ++V Sbjct: 144 ATENAPPGKIAWYGCFPQLGAPLGFFLSGGIFLLLSETLTNEQFFSYGWRIPFIASAVLV 203 Query: 199 PVLFVIRRSLQETEEFMR-----RKHRPSTGQIFRSMIENWKLVIAGMMLVSMTTVSFYL 253 V +R + ET F + + + IFR E+ ++++ G ++ + T V FYL Sbjct: 204 LVGLYVRLKITETPVFQKVLDKNERVKVPIATIFR---EHSRVLVLGTIIATATFVLFYL 260 Query: 254 ITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLPIMGALSDRIGRRPILVVFTVLTIL 313 +TV+ ++G L + + LI+ L + + +PI L+D+ GRR +++ ++ +L Sbjct: 261 MTVFALSWGTTGLGYTRKEFLILQLFAVVFFALTIPISALLADKYGRRITMILVSIAIML 320 Query: 314 TAY-PAVNWLVHDATFAKMLMVELWLSFLYASYNGAMVVALTEVMPADVRTAGFSLAYSL 372 + + ++ HDA + L L+ + +Y G + L+E+ P ++R G SL ++L Sbjct: 321 FGFLISPMFVAHDA-IGVTFFLSLGLALMGMTY-GPLGTMLSELFPTEIRYTGVSLTFNL 378 Query: 373 ATAVFGGFTPAIAT 386 V P AT Sbjct: 379 GGIVGASLAPYAAT 392 >gi|152980800|ref|YP_001354171.1| major facilitator superfamily sugar transporter [Janthinobacterium sp. Marseille] Length = 544 Score = 140 bits (354), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 93/311 (29%), Positives = 166/311 (53%), Gaps = 17/311 (5%) Query: 6 SSQSKFSTVLRVTSGNFMEMFDFFLFGFYATHISKAFFPSDNDFASLMLTFMTFGAGFLM 65 +++ + VL T G E +DFF++G A +S FP DN A+L+ + AGF++ Sbjct: 15 TAKEERQVVLASTLGTIFEWYDFFIYGSLAIFMSSVLFPPDNPTAALLASLGALAAGFVI 74 Query: 66 RPLGAIILGAYVDRVGRRQGLIVTLALMALGTMLIAFVPSYASIGALAPMLVLIGRLLQG 125 RP+GA++ G DR+GR+ ++T+ +M T LI F+PSYAS+G A + +++ RL+QG Sbjct: 75 RPIGAVLFGYLGDRLGRKHTFLLTIIMMGGSTALIGFLPSYASVGHAAWISLVVLRLVQG 134 Query: 126 FSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQVAIIVAAAIGYALSTTLTPAQVGDW 185 + G E GG +Y+AE + P +G W + + +I++ A+ T+ A +W Sbjct: 135 LAVGGEYGGAVIYVAEHSRPSRRGLLTGWIQITSSMGLILSIAVILGTQATMDMASFKEW 194 Query: 186 GWRIPFFIGCLIVPVLFVIRRSLQETEEFMRRKHRPSTGQIFRSMIEN--WKLVIAGMML 243 GWR+PF I ++ +R L E+ F R K + G++ ++ + + +K M+L Sbjct: 195 GWRVPFIISIAMLIFSVYVRAKLHESPVFTRLK---AQGRLSKNPVRDTFFKWPSLKMIL 251 Query: 244 VSMTTV------SFYLITVYTPTFGKNVLKLSTEASLIVTLCVGLSNFIWLP---IMGAL 294 +++ V +++ Y F + + L + ++ +C+G I P G L Sbjct: 252 LALFGVTAGQGATYFTGQFYVMIFLQQAVMLD-QRTVYTLICIGF--LIGAPAFVFFGWL 308 Query: 295 SDRIGRRPILV 305 SDR+GR+ I++ Sbjct: 309 SDRLGRKWIMM 319 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.328 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 889,436 Number of extensions: 35807 Number of successful extensions: 257 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 241 Number of HSP's successfully gapped: 8 Length of query: 428 Length of database: 1,221,021 Length adjustment: 86 Effective length of query: 342 Effective length of database: 903,079 Effective search space: 308853018 Effective search space used: 308853018 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 131 (55.1 bits)