BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2543.p (397 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981393|ref|YP_001352305.1| dihydropteridine reductase [Jan... 244 7e-66 gi|152981503|ref|YP_001352912.1| vanillate monooxygenase, beta s... 80 2e-16 gi|152981490|ref|YP_001354196.1| vanB family oxidoreductase/oxyg... 69 4e-13 gi|152981444|ref|YP_001353363.1| vanB family oxidoreductase/oxyg... 65 9e-12 gi|152983026|ref|YP_001352579.1| ferredoxin/oxidoreductase FAD/N... 63 3e-11 >gi|152981393|ref|YP_001352305.1| dihydropteridine reductase [Janthinobacterium sp. Marseille] Length = 400 Score = 244 bits (623), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 165/407 (40%), Positives = 226/407 (55%), Gaps = 29/407 (7%) Query: 1 MLTDAQLAIVKSTVPLLESGGEALTTHFYKLLMRDYPQVHPLFNRAHQASGDQPRALANG 60 ML+ A + ++VP+L G A+T FYK L +PQ+H +FN +QA+G Q ++LA+ Sbjct: 1 MLSAASRPYIDASVPVLREHGLAITQAFYKNLFISHPQLHNIFNAGNQANGAQQQSLASA 60 Query: 61 VLMYARHIDRLEELGPLAAQIINKHVAVQVMPEHYPMVGDCLLRAIREVLGAEIATDAVI 120 V YA +ID L P+ ++I++KHV++ V HYP+VG+ LL AI++VLG + AT +I Sbjct: 61 VFAYAANIDNPSALAPVISRIVHKHVSLGVTAAHYPIVGEHLLGAIKQVLG-DAATPELI 119 Query: 121 DAWAAAYGQLADILIGAERQQYDAKAEAPGGWRGARNFVVTRKVAESEEITSFYFMPQDG 180 AWA AYG LA LI E++ Y A PG + VT ESE++ SF +PQDG Sbjct: 120 AAWAEAYGILAQALIDEEQRLYTAAGIQPGDLFEMK---VTAVEQESEQVKSFTLVPQDG 176 Query: 181 GALLDFEPGQYIGLRM-VVDGLEQRRQYSLSAPLRQAGQPLQYRISVKREASGK------ 233 + F+PGQY+ + + + +GL Q RQYSLS A RISVKRE +GK Sbjct: 177 SSSPAFQPGQYVSVAVHLPNGLRQLRQYSLS----DAPDHRHLRISVKREVAGKETPAGM 232 Query: 234 VSRQLHDHIHVGSVVELFPPAGDFTLTANAK-PLALISGGVGITPMMTMLA--AALPSGR 290 VS LHD++ G V+ + P GDFT + + L+S GVGITPM++ L A + R Sbjct: 233 VSNWLHDNVQAGGVLSVSKPFGDFTPDTDGDGAIVLLSAGVGITPMISALNRIAYVAPQR 292 Query: 291 PVHFIHAARHAGVHAFRRELEQLAAQHPQLQLHFCYEQARAGDPAAHANGFIDPARLQ-- 348 V F HAAR+A H R ++ + AA P LQ YE+ + A NG P R+Q Sbjct: 293 RVIFAHAARNAKHHPHRADIAKAAALMPNLQSVTFYEE----EDAVQENGAAVPGRMQLK 348 Query: 349 ---QWLPATRDIDAYFVGPKPFMKAIKHALAELGVPAAQSRYEFFGP 392 QW A + Y GP PFM+A L GVP E FGP Sbjct: 349 KLPQWDVANTKV--YMCGPLPFMQAQWADLVAQGVPPQNLHREVFGP 393 >gi|152981503|ref|YP_001352912.1| vanillate monooxygenase, beta subunit [Janthinobacterium sp. Marseille] Length = 329 Score = 80.1 bits (196), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 53/158 (33%), Positives = 79/158 (50%), Gaps = 1/158 (0%) Query: 157 NFVVTRKVAESEEITSFYFMPQDGGALLDFEPGQYIGLRMVVDGLE-QRRQYSLSAPLRQ 215 VV+ A + I +F DG AL + G +I +++++ G + R YSL Sbjct: 13 TVVVSEIRALTPTIKAFVLHSTDGTALPAYTAGAHIRVQVILPGGDADERSYSLIDDSVG 72 Query: 216 AGQPLQYRISVKREASGKVSRQLHDHIHVGSVVELFPPAGDFTLTANAKPLALISGGVGI 275 + YRI+V+REA GK + VGS + + PP DF L A+A+ LI+GG+GI Sbjct: 73 SECRSYYRIAVQREAKGKGGSAFMHGLEVGSHLSIRPPKNDFPLDASARHNVLIAGGIGI 132 Query: 276 TPMMTMLAAALPSGRPVHFIHAARHAGVHAFRRELEQL 313 TP++ M A GR F + R + AFR +E Sbjct: 133 TPILAMAYALQAGGRSFEFHYGTRSPDLMAFRDVVETF 170 >gi|152981490|ref|YP_001354196.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 327 Score = 69.3 bits (168), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 100/233 (42%), Gaps = 18/233 (7%) Query: 166 ESEEITSFYFMPQDGGALLDFEPGQYIGLRMVVDGLEQRRQYSLSAPLRQAGQPLQYRIS 225 E+E+I SF P G L G +I + + +GL RQYSL P G+ Y I Sbjct: 17 EAEQIRSFELCPLAGERLPAAAAGAHIDVHLP-NGL--VRQYSLLHP----GESKAYMIG 69 Query: 226 VKRE-ASGKVSRQLHDHIHVGSVVELFPPAGDFTLTANAKPLALISGGVGITPMMTMLAA 284 V R+ S S LH+ + G V+ + P +F L A LI+GG+GITP+ +M+ Sbjct: 70 VNRDPVSRGGSSYLHEAVKPGDVLTISVPRNNFPLHEEAAHSVLIAGGIGITPIFSMVQR 129 Query: 285 ALPSGRPVHFIHAARHAGVHAFRRELEQLAAQHPQLQLHFCYEQARAGDPAAHANGFIDP 344 GR + R AF EL+ LAA LH ++Q N ++ Sbjct: 130 LNQIGRAWTLYYCTRTEERAAFLDELKTLAATTETGNLHTVFDQVP-------GNQMLNL 182 Query: 345 ARLQQWLPATRDIDAYF--VGPKPFMKAIKHALAELGVPAAQSRYEFFGPAAA 395 A L Q A A+F GP ++ + A A + Y F PA A Sbjct: 183 AELVQHSEAEHAGAAHFYCCGPGMLLQGFQQATATVAAERVHVEY-FSAPAVA 234 >gi|152981444|ref|YP_001353363.1| vanB family oxidoreductase/oxygenase [Janthinobacterium sp. Marseille] Length = 319 Score = 64.7 bits (156), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 100/233 (42%), Gaps = 35/233 (15%) Query: 160 VTRKVAESEEITSFYFMPQDGGALLDFEPGQYIGLRMVVDGLEQRRQYSLSAPLRQAGQP 219 V + E+ +I SF G AL F PG +I + + +GL RQYSL +P Sbjct: 8 VHKITQEACDIKSFELRSVSGEALPAFTPGSHIDVH-IGEGL--IRQYSLC---NGPDEP 61 Query: 220 LQYRISVKREASGKVSRQ-LHDHIHVGSVVELFPPAGDFTLTANAKPLALISGGVGITPM 278 +Y I+VK+E + + Q +H+ I G +++ P +F L + P L++GG+G+TP+ Sbjct: 62 DRYLIAVKKEVTSRGGSQAMHESIREGDQIKISAPRNNFPLEQSQGPYLLLAGGIGVTPV 121 Query: 279 MTMLAAALPSGRPV---HFIHAARHAGVHAFRRELEQLAAQHPQLQLHFCYEQARAGDPA 335 ++M L G +F + H HA E P+ Q + A Sbjct: 122 LSMARHLLAQGVEFELQYFTRSIAHTAFHALLSE--------PEFQGRIKFHYA------ 167 Query: 336 AHANGFIDPARLQQWLPAT-----RDIDAYFVGPKPFMKAIKHALAELGVPAA 383 ++P L+ +L + Y GP+ FM ++ A P A Sbjct: 168 ------LEPEGLRAYLRKLLWHYPENGSLYLCGPRVFMDLVESTAAATWPPEA 214 >gi|152983026|ref|YP_001352579.1| ferredoxin/oxidoreductase FAD/NAD(P)-binding [Janthinobacterium sp. Marseille] Length = 310 Score = 63.2 bits (152), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 81/190 (42%), Gaps = 25/190 (13%) Query: 205 RQYSLSAPLRQAGQPLQ---YRISVKREASGKV-SRQLHDHIHVGSVVELFPPAGDFTLT 260 RQYSL G P Y+I+V+RE SG+ SR +H+ + +GSV+ + P +F ++ Sbjct: 47 RQYSL------CGNPADDTIYKIAVRREDSGRGGSRWMHEQVDLGSVLHVTAPRNNFPIS 100 Query: 261 ANAKPLALISGGVGITPMMTMLAAALPSGRPVHFIHAARHAGVHAFRRELEQLAAQHPQL 320 A I+GG+GITP +M+ + + P + R A L+Q Q Sbjct: 101 PIATRNIFIAGGIGITPFASMVIESKNANVPFQLDYCVRSAADAPLLTFLQQTVVQE--- 157 Query: 321 QLHFCYEQARAGDPAAHANGFIDPARLQQWLPATRDIDAYFVGPKPFMKAIKHALAELGV 380 LH A GD + + + P Y GP + A++ A Sbjct: 158 NLHL---WASNGDERRRFD-------VNEIGPPVEGTHIYCCGPGKLVDAVRQATESW-- 205 Query: 381 PAAQSRYEFF 390 P +Q +E F Sbjct: 206 PESQVHFEVF 215 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 919,432 Number of extensions: 36789 Number of successful extensions: 117 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 108 Number of HSP's successfully gapped: 7 Length of query: 397 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 312 Effective length of database: 906,776 Effective search space: 282914112 Effective search space used: 282914112 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 130 (54.7 bits)