BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2542.p (529 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 235 6e-63 gi|152982294|ref|YP_001354298.1| transcriptional regulator [Jant... 231 9e-62 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 228 6e-61 gi|152979868|ref|YP_001354671.1| two-components system response ... 221 7e-59 gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptio... 218 9e-58 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 235 bits (599), Expect = 6e-63, Method: Compositional matrix adjust. Identities = 141/367 (38%), Positives = 206/367 (56%), Gaps = 38/367 (10%) Query: 199 ELIGQSPAQRQLLEEIRMAAPSDMTVLVTGETGTGKELVAHALHAASPRAAKPMISLNCA 258 E++GQ+PA + + I + S++TVL+TGE+G+GKELVA ALH SPRA++P I+LN A Sbjct: 135 EILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKELVARALHKHSPRASQPFIALNTA 194 Query: 259 ALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDEVGELPLAVQAKLLRVLQS 318 A+P L+ESELFGH RGAF+GA A RRG+FE A+ GTLFLDE+G++P +Q +LLRVL Sbjct: 195 AIPKDLLESELFGHERGAFTGAQATRRGRFEQAENGTLFLDEIGDMPFDLQTRLLRVLSD 254 Query: 319 GQLQRVGSDREHRVDVRLIAATNRDLAEEVKRGHFRADFYHRLSVFPIRVPPLRERGRDV 378 G RVG + + +VR+IAAT+++L V+ G FR D YHRL+V +R+P LRER D+ Sbjct: 255 GHFYRVGGHQPLKANVRVIAATHQNLEHRVREGLFREDLYHRLNVIRLRLPSLRERREDI 314 Query: 379 LLLAGYFLEQNRARLGLSSLRLSADAQHSLLAYPWPGNIRELEHLIGRSALRA---LAAH 435 +L +FL+Q+ +LG+ R+S A L + PGN+R+LE+L + A Sbjct: 315 PILTRHFLQQSAKQLGVEVKRMSDSAMQFLSSLELPGNVRQLENLCNWITVMAPGQTVEA 374 Query: 436 PTRPAILTLDAQALELHATD--PGPVASAAPVAALAEPSSDDAPA--------------- 478 P LT + QA A+ PG +A A E +S + Sbjct: 375 KDLPHELT-EGQAFAASASGSFPGSQPAAHSYATTDEAASPNGAPPSMAFAAPAPAEPGN 433 Query: 479 -----------------PDSLRQAVERYERQLVRQSLERNAGNLAAAARELGLDRANLSR 521 P+ + ++E L++ +L+ G AA LG+ R ++R Sbjct: 434 WITLLETEAAALLAAGQPEVMDALGRQFESTLIKTALKHTHGRKNDAAVRLGIGRNTITR 493 Query: 522 LARRLGL 528 LG+ Sbjct: 494 KIHELGI 500 >gi|152982294|ref|YP_001354298.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 371 Score = 231 bits (589), Expect = 9e-62, Method: Compositional matrix adjust. Identities = 118/244 (48%), Positives = 166/244 (68%), Gaps = 3/244 (1%) Query: 199 ELIGQSPAQRQLLEEIRMAAPSDMTVLVTGETGTGKELVAHALHAASPRAAKPMISLNCA 258 +L G S +QL + I AP+ VL+ GE+GTGKELVA A+H S KP ++LNC+ Sbjct: 44 DLYGASAPMQQLFQMIGKVAPTTANVLIAGESGTGKELVAQAIHQLSREQDKPFVALNCS 103 Query: 259 ALPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDEVGELPLAVQAKLLRVLQS 318 A+ L+E+ELFGH RG+F+GA+ ++G FE ADGGTLFLDEV E+ L +Q KLLRVL++ Sbjct: 104 AVSPQLIEAELFGHERGSFTGAIRMQKGCFERADGGTLFLDEVTEMSLDMQVKLLRVLET 163 Query: 319 GQLQRVGSDREHRVDVRLIAATNRDLAEEVKRGHFRADFYHRLSVFPIRVPPLRERGRDV 378 + R+G++ E V VR++AATNRD E +K G R+D ++RL+VFP+ +PPLRERG D+ Sbjct: 164 SRFCRIGAEEETEVKVRVVAATNRDPVEAMKSGILRSDLFYRLAVFPLDLPPLRERGEDI 223 Query: 379 LLLAGYFLEQNRARLGLSSLRLSADAQHSLL-AYPWPGNIRELEHLIGRSALRALAAHPT 437 LLAG FL+Q G + R+ + A LL Y WPGN+REL++++ R+ + A Sbjct: 224 RLLAGLFLDQLNEEDGRN--RVFSKASWRLLNEYNWPGNVRELKNVVHRAYIMADQELEL 281 Query: 438 RPAI 441 PA+ Sbjct: 282 LPAV 285 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 228 bits (581), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 141/368 (38%), Positives = 200/368 (54%), Gaps = 38/368 (10%) Query: 166 VAERINALSQAGEQARQRAEAYRLGLE-----ESQGKRELIGQSPAQRQLLEEIRMAAPS 220 V + ++A+ + ++A R E + L E + G L+G S A + E I+ A Sbjct: 147 VNQILSAIGRCFDRAHLRRENFILRRELDSHIDLAGVEGLVGASAALEPIREAIKRLATV 206 Query: 221 DMTVLVTGETGTGKELVAHALHAASPRAAKPMISLNCAALPDTLVESELFGHVRGAFSGA 280 TVL+TGE+GTGKE+ A A+H S R+ + +NC A+ ++ESELFGH++GAFSGA Sbjct: 207 PSTVLITGESGTGKEIAARAMHKLSNRSHNHFVPINCGAVAPDIIESELFGHIKGAFSGA 266 Query: 281 VADRRGKFEMADGGTLFLDEVGELPLAVQAKLLRVLQSGQLQRVGSDREHRVDVRLIAAT 340 + R G F A GGTLFLDEV ELPLA+Q KLLRVL+ +++ VG++RE VDVR+IAAT Sbjct: 267 ASSREGLFFYAQGGTLFLDEVAELPLAMQVKLLRVLEEKRIRPVGAEREIPVDVRVIAAT 326 Query: 341 NRDLAEEVKRGHFRADFYHRLSVFPIRVPPLRERGRDVLLLAGYFLEQNRARLGLSSLRL 400 NR++ E V+ G FR D Y+RL+V + +PPLRER D+ LA YF+ Q +LG+ + + Sbjct: 327 NRNVEEAVQEGRFRQDLYYRLNVVQLHMPPLRERTEDIPALAEYFVRQLAQQLGVPAKKP 386 Query: 401 SADAQHSLLAYPWPGNIRELEHLIGRSALRALAAHPTRPAILTLDAQALELHATDPGPVA 460 + SL Y WPGN+REL +LI R + + T A + G Sbjct: 387 DSALFASLAGYSWPGNVRELRNLIERWLILGNISDVT--------------AANNTGSTT 432 Query: 461 SAAPVAALAEPSSDDAPAPDSLRQAVERYERQLVRQSLERNAGNLAAAARELGLDRANLS 520 + V +E E+Q + + L GN A R LG+ R L Sbjct: 433 TNGDV-------------------TLEAVEKQHILKILAEVGGNKTEAGRRLGISRKTLE 473 Query: 521 RLARRLGL 528 R G+ Sbjct: 474 RKCAEWGV 481 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 221 bits (564), Expect = 7e-59, Method: Compositional matrix adjust. Identities = 137/333 (41%), Positives = 201/333 (60%), Gaps = 9/333 (2%) Query: 200 LIGQSPAQRQLLEEIRMAAPSDMTVLVTGETGTGKELVAHALHAASPRAAKPMISLNCAA 259 L+GQS A L +I A S V ++GE+G+GKEL A +HA S R+ KP +++NC A Sbjct: 140 LMGQSEAMLALRAQIARLARSMAPVAISGESGSGKELAARDIHAQSARSDKPFVAVNCGA 199 Query: 260 LPDTLVESELFGHVRGAFSGAVADRRGKFEMADGGTLFLDEVGELPLAVQAKLLRVLQSG 319 +P+ L+E+E FG+ +GAF+GAV DR G F+ A+GGTL LDEV +LPLA+Q KLLR +Q Sbjct: 200 IPEALMEAEFFGYRKGAFTGAVDDRDGFFQAANGGTLLLDEVADLPLAMQVKLLRAIQER 259 Query: 320 QLQRVGSDREHRVDVRLIAATNRDLAEEVKRGHFRADFYHRLSVFPIRVPPLRERGRDVL 379 ++++VG+ E VDVR+I+AT+++L + V RG FR D Y+RL+V + +PPLRER D+ Sbjct: 260 RVRKVGATTEEPVDVRIISATHQNLHDCVGRGTFRQDLYYRLNVIELNLPPLRERLDDIA 319 Query: 380 LLAGYFLEQNRARLGLSSLRLSADAQHSLLAYPWPGNIRELEHLIGRSALRALAAHPTRP 439 LLA L RL RL+ A +LL Y +PGN+RELE+++ R AL Sbjct: 320 LLAKAIL----TRLDAGQARLTPAALEALLQYSFPGNVRELENILER-ALAFANDGVIEV 374 Query: 440 AILTLDA----QALELHATDPGPVASAAPVAALAEPSSDDAPAPDSLRQAVERYERQLVR 495 + L L A +A+ + V A VA A+P + + P SL ++ ER+++R Sbjct: 375 SDLVLKAAHTPKAVAAEMVEALAVPEQAMVAPDAKPLAATSDLPGSLPDHLDDVEREIIR 434 Query: 496 QSLERNAGNLAAAARELGLDRANLSRLARRLGL 528 ++L + N AA LG+ L +RL + Sbjct: 435 RALSKTQFNRTQAAELLGISFRQLRYRMQRLDI 467 >gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptional activator [Janthinobacterium sp. Marseille] Length = 550 Score = 218 bits (554), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 142/376 (37%), Positives = 209/376 (55%), Gaps = 42/376 (11%) Query: 158 ALAAATVNVAERINALSQAGEQARQRAEAYRLGLEESQGKRE------LIGQSPAQRQLL 211 A+ +N + + E AR + + +R +E SQ + + LI +SP +Q+ Sbjct: 200 AVRKVIINSRDTTELIQLQEELARAQEKLHRFEMEVSQLRMDNPAIAGLITRSPGMQQIT 259 Query: 212 EEIRMAAPSDMTVLVTGETGTGKELVAHALHAASPRAAKPMISLNCAALPDTLVESELFG 271 + A TVL++GE+G GKE++ +H S A P + +NC A+P L+ESELFG Sbjct: 260 ALAQKVAKVSATVLISGESGVGKEVLTRLIHKESAHHAGPFVKINCGAIPRDLLESELFG 319 Query: 272 HVRGAFSGAVADRRGK---FEMADGGTLFLDEVGELPLAVQAKLLRVLQSGQLQRVGSDR 328 + GAF+GA R+GK E+AD GTLFLDE+GELPL +Q KLL+VLQ L R+G R Sbjct: 320 YEAGAFTGA--QRQGKVGMIEVADKGTLFLDEIGELPLDLQVKLLQVLQDRTLTRLGGTR 377 Query: 329 EHRVDVRLIAATNRDLAEEVKRGHFRADFYHRLSVFPIRVPPLRERGRDVLLLAGYFLEQ 388 +VDVR++AATNRDL V FR+D ++RL+V P+ VPPLRER D+L L ++L++ Sbjct: 378 PIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPLHVPPLRERREDILPLIQHYLDE 437 Query: 389 NRARLGLSSLRLSADAQHSLLAYPWPGNIRELEHLIGRSALRALAAHPTRPAILTLDAQA 448 A+ L RLS A +LL Y WPGN+REL +++ R Sbjct: 438 LNAQYDLDK-RLSEQALAALLDYDWPGNVRELRNMVER---------------------- 474 Query: 449 LELHATDPGPVASAAPVAAL---AEPSSDDAPAPDSLRQAVERYERQLVRQSLERNAGNL 505 L T P + + + L +E SD A R A +ER++V++++ER GN Sbjct: 475 --LVVTAPESLIRSDSLPTLLRSSELESDLARLDIKARSA--HFERKIVKEAVER-YGNT 529 Query: 506 AAAARELGLDRANLSR 521 AAA+ L + ++ + R Sbjct: 530 RAAAKHLQVSQSTVVR 545 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,055,502 Number of extensions: 41263 Number of successful extensions: 209 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 198 Number of HSP's successfully gapped: 7 Length of query: 529 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 441 Effective length of database: 895,685 Effective search space: 394997085 Effective search space used: 394997085 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)