BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2525.p (564 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980052|ref|YP_001353840.1| acetolactate synthase large sub... 155 6e-39 gi|152981070|ref|YP_001352069.1| glyoxylate carboligase [Janthin... 141 8e-35 gi|152980239|ref|YP_001352089.1| putative oxalyl-CoA decarboxyla... 91 3e-19 >gi|152980052|ref|YP_001353840.1| acetolactate synthase large subunit [Janthinobacterium sp. Marseille] Length = 583 Score = 155 bits (392), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 139/557 (24%), Positives = 229/557 (41%), Gaps = 24/557 (4%) Query: 4 TVADILIDTLYQIGVRQIFGVVGDALNPFTDALRRDKRIEWIGVRHEEGAALAAAGQAKL 63 T A+I++ L + GV +FG G A+ DA+ + + I VRHE+ A AA ++ Sbjct: 18 TGAEIVVRCLAEEGVEHVFGYPGGAVLYIYDAIFNHSKFQHILVRHEQAAVHAADAYSRS 77 Query: 64 TGRLAVCCGTTGPGANHLVAGLYEARKDHAPVLAISGGVPAARRGTDYLQENSPDMLFRD 123 + ++ VC T+GPG + V GL A D P++ ISG VP+ G D QE + R Sbjct: 78 SNKIGVCLVTSGPGVTNAVTGLATAYMDSIPMIVISGQVPSHAIGLDAFQECDTVGITRP 137 Query: 124 VAAYSQIVTSPEQAPAVFHQAIAQAYAQR-GVAHLNIPADIIGAKVSSTVPSIHTLRQRA 182 ++ +V + A +A A R G ++IP DI K P +R Sbjct: 138 CVKHNFLVKDVKDLAATMKKAFFIATTGRPGPVLIDIPKDITMHKCVFEYPKEVEMRSYK 197 Query: 183 ELAP-PTADIAAAAELINSASSVAIFAGNGC--RGAIEPVLALASKLQAPVMHTFRGKDL 239 + + I A +L+ A I+ G G A E + L +L P +T G Sbjct: 198 PVDKGHSGQIRKAVQLLLQAERPMIYTGGGVILANASEELNRLVDRLGYPCTNTLMGLGA 257 Query: 240 VAFDHPHWIGGVGLIGGAPGTDALHGAEVMLMLGSDYPY------SEFLPTQSKVIQVDE 293 ++G G+ G A+ ++VM+ +G+ + F T K+I +D Sbjct: 258 YKASSDKFVGMPGMHGTYEANMAMQHSDVMIAIGARFDDRVIGNPKHFSATPRKIIHIDI 317 Query: 294 RGFVLGRRAPVTLGITGSVGPTVQALLEQVEGKTD-------GSFLQQANAQRERWNAKL 346 + +R V + I G+V + LL Q++ ++ +Q N R+R K Sbjct: 318 DPSSISKRVKVDIPIVGNVKEVLVELLAQLDAADAKPNSVALSAWWKQINEWRKRDCLKF 377 Query: 347 DSAAEIKRHHKKIKPQSLARALSDLADDDAQFVIDTGVVTLWCGNWIRQRGQQRLLASFN 406 + E+ IKPQS+ + + ++ DA D G +W + +R + S Sbjct: 378 TDSTEV------IKPQSVIQKVWEVTKGDAFITSDVGQHQMWAAQYYPFNKPRRWINSGG 431 Query: 407 NAAVGTSLGQANGIQALDRQRQVLVAVGDGGFTMLLGEFMTSVEHRLPVKVVVFNNREWG 466 +G L A G+Q + V G+ M + E T ++ L K+++ NNR G Sbjct: 432 LGTMGVGLPYAMGVQKANPDATVACITGEASIQMCIQELATCKQYHLTPKIILLNNRFLG 491 Query: 467 LV-HLEMEEAGMPAFEGSEFPNADFAAFARACGGQGFTARTPDELQDSLQQLLAASGPAV 525 +V + E G E DF + G G P ++ +L++ V Sbjct: 492 MVRQWQQLEYGSRYSESYMDSLPDFNKLVESYGHVGMKIENPADVDGALKEAFDMKDRLV 551 Query: 526 LDVFIDPAELPVMPHIK 542 FI V P +K Sbjct: 552 FMNFITDQTENVWPMVK 568 >gi|152981070|ref|YP_001352069.1| glyoxylate carboligase [Janthinobacterium sp. Marseille] Length = 582 Score = 141 bits (356), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 141/579 (24%), Positives = 239/579 (41%), Gaps = 61/579 (10%) Query: 4 TVADILIDTLYQIGVRQIFGVVGDALNPFTDALRRDKRIEWIGVRHEEGAALAAAGQAKL 63 T A + + + G+ Q FGV G A+NPF A+++ I+ I RH EGA A G + Sbjct: 5 TAAQAAVWVMQKEGIDQAFGVPGAAINPFYSAMQKQGTIKHILARHVEGATHMAEGYTRA 64 Query: 64 -TGRLAVCCGTTGPGANHLVAGLYEARKDHAPVLAISGGVPAARRGTDYLQENSPDMLFR 122 +G + V T+GPG +V GLY A D P+L ++G P AR + Q + + + Sbjct: 65 KSGNIGVALATSGPGGTDMVTGLYSAIADSIPILCVTGQAPRARLHKEDFQAVDIESISK 124 Query: 123 DVAAYSQIVTSPEQAPAVFHQAIAQAYAQR-GVAHLNIPADIIGAKVSSTVPSIHTLRQR 181 V +S +V P P VF QA + R G +++P D+ A++ P ++ Sbjct: 125 PVTKWSVMVREPALVPQVFQQAFHIMRSGRPGPVLIDLPFDVQVAEIEFD-PDLYEPLPV 183 Query: 182 AELAPPTADIAAAAELINSASSVAIFAGNGC--RGAIEPVLALASKLQAPVMHTFRGKDL 239 + I AA ++N+A + +G G A +L A + PV+ T G Sbjct: 184 YKPQATRKQIEAAIAMLNAAERPLLISGGGVINANATPLMLEFAELVNVPVVPTLMGWGT 243 Query: 240 VAFDHPHWIGGVGLIGGAPGTDALHGAEVMLMLGSDYPYS-------------EFLPTQS 286 V DHP +G VGL H ML SD+ + + Sbjct: 244 VPDDHPLMVGMVGL-------QTSHRYGNATMLASDFAFGIGNRWANRFTGSIDVFTKDR 296 Query: 287 KVIQVDERGFVLGRRAPVTLGITGSVGPTVQALLEQV-EGKTDGSFLQQANAQRERWNAK 345 K + +D +GR LGIT G ++ ++E E K G R+ W Sbjct: 297 KFVHIDIEPTQIGRVFGPDLGITSDAGAALKLMIEVAKELKAAGKL-----KNRDAW--- 348 Query: 346 LDSAAEIKRHHKK--------IKPQSLARALSDLADDDAQFVIDTGVVTLWCGNWIRQRG 397 L E KR + IKPQ + + ++ + A+++ + G+ + G ++ Sbjct: 349 LAECQERKRTMLRKTDFDVTPIKPQRVYQEMNAVFGKTARYISNIGLSQIAAGQFLHVYK 408 Query: 398 QQRLLASFNNAAVGTSLGQANGIQALDRQRQVLVAVGDGGFTMLLGEFMTSVEHRLPVKV 457 ++ + +G ++ A G++A D +++ GD F L+ E + LP Sbjct: 409 ERNWINCGQAGPLGWTIPAALGVRAADPTSEIVAITGDYDFQFLIEELAAGAQFNLPYIH 468 Query: 458 VVFNNREWGLVH-----LEMEEAGMPAFEG-SEFPNA----DFAAFARACGGQGFTARTP 507 V+ NN GL+ M+ AF+ + NA D G + P Sbjct: 469 VLVNNSYLGLIRQAQRMFTMDYCVSLAFDNINSTENASYGVDHVKVTEGLGCKAIRVYNP 528 Query: 508 DELQDSLQQLLAASGPAVLDVFIDPAELPVMPHIKMEQI 546 D++ +L++ +I ++PV+ I +E++ Sbjct: 529 DDIAPALKK---------AQEWIKEFKVPVVVEIILERV 558 >gi|152980239|ref|YP_001352089.1| putative oxalyl-CoA decarboxylase [Janthinobacterium sp. Marseille] Length = 570 Score = 90.5 bits (223), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 129/567 (22%), Positives = 231/567 (40%), Gaps = 78/567 (13%) Query: 8 ILIDTLYQIGVRQIFGVVGDALNPFTDALR--RDKRIEWIGVRHEEGAALAAAGQAKLTG 65 +L++ L G+ I+G++G P T+ R + + ++ R+E+ A AA+ LT Sbjct: 20 LLMEALEMNGITNIYGLLGI---PVTEIGRMWQARGNKFFSFRNEQNAGYAASVAGYLTK 76 Query: 66 RLAVCCGTTGPGANHLVAGLYEARKDHAPVLAISGGVPAARRGTDYLQENSPDM----LF 121 + VC + PG + + L A + P++ ISG + R D Q + +M + Sbjct: 77 KPGVCVTVSAPGFLNGLTALANATTNCFPMILISGS--SEREIVDLQQGDYEEMDQLNIA 134 Query: 122 RDVAAYSQIVTSPEQAPAVFHQAIAQAYAQR-GVAHLNIPADIIGAKVSSTVPS----IH 176 R S + E +AI A + R G +L+IPA + +S+ + Sbjct: 135 RPHCKASFRINRTEDIGVAVVRAIRTALSGRPGGVYLDIPARLFSTTMSAEEGQKSLFVP 194 Query: 177 TLRQRAELAPPTADIAAAAELINSASSVAIFAGNG-----CRGAIEPVLALASKLQAPVM 231 A+L P+A ++ A ELI A I G G C I+ AL + P Sbjct: 195 VDPAPAQLPAPSA-VSRAVELIKGAKKPLILLGKGAAYAQCDADIK---ALIEETGIPFT 250 Query: 232 HTFRGKDLVAFDHPHWIGGVGLIGGAPGTDALHGAEVMLMLGSDYPY------SEFLPTQ 285 K LV+ HP A + L ++V++++G+ + + Sbjct: 251 PMSMAKGLVSDTHPQ-------CAAAARSMVLQESDVVILIGARLNWLLAHGKGKTWGGA 303 Query: 286 SKVIQVDERGFVLGRRAPVTLGITGSVGPTVQALLEQVEGKTD-----GSFLQQANAQRE 340 K +Q+D + + P+ + G + V AL ++G + ++A + Sbjct: 304 KKFVQIDIQANEIDSNVPIAAPLIGDIESCVNALRAGLKGAAKPTEWMSAIAERATGTKA 363 Query: 341 RWNAKLDSAAEIKRHHKKIKPQSLARALSDLAD-----------DDAQFVIDTGVVTLWC 389 + KL +A + + + ++ L + D D+A+ VID Sbjct: 364 KLATKLSTATPVMNYFNSLG--AIRDVLKNYPDITLVNEGANTLDNARMVID-------- 413 Query: 390 GNWIRQRGQQRLLASFNNAAVGTSLGQANGIQALDRQRQVLVAVGDGGFTMLLGEFMTSV 449 Q ++ + + +G +G A A++ + V+ GD F E+ T Sbjct: 414 -----QYLPRKRVDTGTWGVMGIGMGSAVA-AAVETGKPVVAICGDSAFGFSAMEYETIT 467 Query: 450 EHRLPVKVVVFNNREWGLVHLEMEEAGMPAFEGSEF---PNADFAAFARACGGQGFTART 506 + LPV V++ NN G ++ +EA P + S P + F+ A GG+G A T Sbjct: 468 RYNLPVTVIIMNN---GGIY-RGDEAN-PEHQVSCMIFNPKTKYDQFSVALGGEGVRAET 522 Query: 507 PDELQDSLQQLLAASGPAVLDVFIDPA 533 P+ L +L+ L + P ++D IDPA Sbjct: 523 PEALAKALEASLKSGKPTIIDAIIDPA 549 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,227,002 Number of extensions: 48000 Number of successful extensions: 176 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 168 Number of HSP's successfully gapped: 3 Length of query: 564 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 476 Effective length of database: 895,685 Effective search space: 426346060 Effective search space used: 426346060 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)