BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2522.p
         (336 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980018|ref|YP_001353066.1| excinuclease ABC subunit C [Jan...    61   1e-10

>gi|152980018|ref|YP_001353066.1| excinuclease ABC subunit C
           [Janthinobacterium sp. Marseille]
          Length = 618

 Score = 60.8 bits (146), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 59/204 (28%), Positives = 88/204 (43%), Gaps = 15/204 (7%)

Query: 59  PLHIDRASIDALPAACGVYILRGVDDVPLYVGRSVNLRSRV----LAQLHHHEDQFLIAR 114
           P  I   ++  LP   GVY     +D  LYVG++ +L+ RV    L  L       ++ R
Sbjct: 9   PRAIVLETVAKLPNLPGVYRYFDAEDNLLYVGKARDLKKRVSSYFLKNLASPRTALMVER 68

Query: 115 TRRIECRRTAGELGAALLENCLLRDLRPAHNKKPRSKRGLFTLRISPQGQPLVAELTERE 174
             R+E   T  E  A LLEN L++ L+P +N   R  +    L+I+ Q  P +A      
Sbjct: 69  IARLETTVTRSEAEALLLENNLIKTLQPRYNILFRDDKSYPYLKITGQEYPRMA-YYRGA 127

Query: 175 SSRAENLFGLYTSQRAAQEALHKLVE----RHCLCSIVTGLEQASSPGMACFGRQIRRCR 230
             +    FG + S  A +E++  L +    R C  S+       + P   C   QI RC 
Sbjct: 128 VDKKNQYFGPFPSGWAVKESMQILQKVFLLRTCEDSV---FANRTRP---CLLHQIHRCS 181

Query: 231 GACTGEESHEQHQQRLLQALQDLR 254
           G C    S E +   +  A + LR
Sbjct: 182 GPCVNFISKEDYALDVENAAKFLR 205


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.137    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 728,639
Number of extensions: 27904
Number of successful extensions: 62
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 1
Length of query: 336
Length of database: 1,221,021
Length adjustment: 84
Effective length of query: 252
Effective length of database: 910,473
Effective search space: 229439196
Effective search space used: 229439196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)