BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2516.p
         (265 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...   316   9e-88

>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score =  316 bits (809), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 155/259 (59%), Positives = 192/259 (74%), Gaps = 6/259 (2%)

Query: 8   LAFTLTLSSLAAGA------AHADALADIQKAGVVRIGVPQDFAPFGSVNTELQLQGLDI 61
           +  +  L  L AGA      A ADAL DIQK GV+R+ VPQDF PFGSV T++  QGLDI
Sbjct: 1   MKLSTILIGLMAGALLLTNVARADALDDIQKKGVLRVAVPQDFPPFGSVTTDMTPQGLDI 60

Query: 62  DVAKLIAQKMGVKAQLVPVASANRIAYLQTHKTDLVISTLGKNAEREKVIDFSQPYAPYN 121
           DVA LIA+K+GVK +L+PV SANRI YLQT K DLVIS++GKN EREKVIDFS  YAP+ 
Sbjct: 61  DVATLIAKKLGVKVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAAYAPFF 120

Query: 122 NSVFGVASIKVSGPADLAGKTVGVARGTFQDLQLTDTAPKSATIKRYEDNNAMISAYVSG 181
           N VFG A  KV+ PADLAGKT+GV RG+ +DL+L+  AP+SATIKRYEDNN  IS+++S 
Sbjct: 121 NGVFGPADQKVAAPADLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGTISSFLSN 180

Query: 182 QVQLVGTGDFVAYALAEKAPNNKPVLKYIIQESACNVGLNKGETALLAKVNDALTEAKKS 241
           QVQLV TG+ +A A+  K P  KP  K++I+ S C++GLNKGE  LL KVN  + +AKK 
Sbjct: 181 QVQLVATGNVIAAAIIAKNPPKKPETKFLIKNSPCSIGLNKGEEKLLEKVNAIIAQAKKD 240

Query: 242 GELNAIVQKWLNVPLPAKM 260
           G LN + +KWL +PLPA +
Sbjct: 241 GSLNTLTEKWLGLPLPASL 259


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.314    0.129    0.353 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 535,010
Number of extensions: 20726
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 2
Length of query: 265
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 183
Effective length of database: 917,867
Effective search space: 167969661
Effective search space used: 167969661
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 128 (53.9 bits)