BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2515.p
         (310 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981680|ref|YP_001352254.1| signal transduction protein [Ja...    70   2e-13

>gi|152981680|ref|YP_001352254.1| signal transduction protein
           [Janthinobacterium sp. Marseille]
          Length = 291

 Score = 69.7 bits (169), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 86/200 (43%), Gaps = 5/200 (2%)

Query: 19  LPAPSGVRLKIMQMCQQEDIALSDLVAQVQGDPILAGRLIQIANIPNINKGRMVAAVNID 78
           LPA   +   +M+    ++  ++ +  +V  D  L+ + +Q AN         V  +   
Sbjct: 25  LPALPAIVQDLMKTIGPDETDINVITRKVAMDQALSAKTLQFANSSFYGLQSKVTTIQ-Q 83

Query: 79  LLLMVGLHAVRQMALAISLTESARRGDCQEFDYQRFWSRSTAMACAGQALGELLQVAPPA 138
            + ++G++AVR +  A +LT    + +C  FD+   W  S A A   + L   L V    
Sbjct: 84  AITLIGVNAVRHVVTATALTGYFPQNNCAGFDFFALWRHSVATAVCARVLARHLHVNQDY 143

Query: 139 EMFTVALLADIGRLGLASARPRRYGELL--RSGAQGTALRAQEKEVFGFHHLELAAAMMQ 196
             FT  LL DIGRL L +     Y  ++  R       L A E+EV G  H+    A+  
Sbjct: 144 -AFTAGLLHDIGRLVLVTYFRNEYEAVIAYRQEHDCHWLEA-EQEVLGVDHVMAGEALAA 201

Query: 197 DWLFPRLFCEAVLHHGAPEQ 216
            W F      A+  H  PEQ
Sbjct: 202 HWNFSDTIRHAIAGHHNPEQ 221


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.136    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 653,664
Number of extensions: 23967
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 310
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 227
Effective length of database: 914,170
Effective search space: 207516590
Effective search space used: 207516590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)