BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2512.p (255 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein... 154 5e-39 gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Jant... 140 1e-34 gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Jant... 129 2e-31 gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Jant... 122 2e-29 gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxo... 120 8e-29 >gi|152981443|ref|YP_001353048.1| 3-oxoacyl-[acyl-carrier protein] reductase [Janthinobacterium sp. Marseille] Length = 247 Score = 154 bits (389), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 96/242 (39%), Positives = 139/242 (57%), Gaps = 8/242 (3%) Query: 14 LSARLALVTGAGQGIGAACADALARQGATVICTDLDGERARATASRLGSSAQAFALDVTD 73 LS ++ALVTGA +GIG A A LA+ GA VI T A A + LG+ + LDV D Sbjct: 6 LSGQVALVTGASRGIGRAIAQELAKLGAKVIGTATSESGAAAISEYLGNGGKGVVLDVND 65 Query: 74 SS----ALNNLAARLPALDVLVCNAGVVSNTPAEEMSDEEWERVLSVNLGGVFKTCRAFA 129 ++ ++ + A+ +LV NAG+ + A M DEEW+ V++ NL V + RA Sbjct: 66 AARSVALIDEIQKEFGAVSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAVL 125 Query: 130 RAMLARGRGAIVNIGSMSGMIVNVPQPQCHYNASKAAVHHLTRSLAVEWATRGVRVNAVA 189 R M+ G I+NI S+ G N Q +Y A+KA V ++R+LA E +R + VN +A Sbjct: 126 RGMMKAKTGRIINITSVVGSSGNA--GQMNYAAAKAGVAGMSRALAREIGSRNITVNCIA 183 Query: 190 PTYIATPLLQELEKEQALISRWLDLTPQQRMGRPEEIAAVVAFLASDAASLITGAVINAD 249 P +I T + + L ++Q I+ L P R+G PE+IAA V+FLAS AS ITG ++ + Sbjct: 184 PGFIDTDMTKTLSEQQ--IAALLQQVPLGRLGVPEDIAAAVSFLASPQASYITGTTLHVN 241 Query: 250 GG 251 GG Sbjct: 242 GG 243 >gi|152981402|ref|YP_001352246.1| acetoacetyl-CoA reductase [Janthinobacterium sp. Marseille] Length = 246 Score = 140 bits (352), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 86/243 (35%), Positives = 134/243 (55%), Gaps = 11/243 (4%) Query: 17 RLALVTGAGQGIGAACADALARQGATVICTDLDGERARATASRL----GSSAQAFALDVT 72 RLALVTG G+G A LA G V+ T G + +L G A+ DV+ Sbjct: 3 RLALVTGGMGGLGEAICIKLAALGYQVVTTYSPGNKKADEWLKLMKESGYDFHAYPCDVS 62 Query: 73 DSSALNNLAARLPA----LDVLVCNAGVVSNTPAEEMSDEEWERVLSVNLGGVFKTCRAF 128 D + A++ +DVLV NAG+ + ++M +W+ V++ NL VF + Sbjct: 63 DYDSAQQCVAQIEKEMGPVDVLVNNAGITRDITFKKMGKPDWDAVMATNLDSVFNMTKPV 122 Query: 129 ARAMLARGRGAIVNIGSMSGMIVNVPQPQCHYNASKAAVHHLTRSLAVEWATRGVRVNAV 188 M+ RG G I+NI S++G Q +Y+A+KA +H T++LA+E A + V VN + Sbjct: 123 CDGMVERGWGRIINISSVNGQ--KGAFGQTNYSAAKAGMHGFTKALALEVARKAVTVNTI 180 Query: 189 APTYIATPLLQELEKEQALISRWLDLTPQQRMGRPEEIAAVVAFLASDAASLITGAVINA 248 +P YI T ++ + ++ L ++ + P R+G+PEEIA +VA+LASD A+ +TGA I Sbjct: 181 SPGYIGTKMVMAIPQD-VLDTKIVPQIPMGRLGKPEEIAGLVAYLASDEAAFLTGANIAI 239 Query: 249 DGG 251 +GG Sbjct: 240 NGG 242 >gi|152980003|ref|YP_001353169.1| short chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 272 Score = 129 bits (324), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/255 (35%), Positives = 144/255 (56%), Gaps = 18/255 (7%) Query: 13 SLSARLALVTGAGQGIGAACADALARQGATVICTDLDGERA---RATASRLGSSAQAFAL 69 + ++ALVTGA G+GA A LA GA VI +R RA G +AQ +L Sbjct: 20 NFEGKVALVTGASSGLGARFAKVLAMAGAQVILASRRVDRLKELRAEIEAEGGAAQVVSL 79 Query: 70 DVTD----SSALNNLAARLPALDVLVCNAGVVSNTPAEEMSDEEWERVLSVNLGGVFKTC 125 DVTD SA+ + A+D+LV N+GV ++ +++ E++ ++ N G F Sbjct: 80 DVTDYASIKSAIAHAETETGAIDILVNNSGVSASQRLVDVTPEDYAHMMDTNQRGAFFVA 139 Query: 126 RAFARAMLARGRG------AIVNIGSMSGMIVNVPQPQCHYNASKAAVHHLTRSLAVEWA 179 + A+ M+AR +G I+NIGS++G+ V VP+ Y SKAAV H+T+++AVEW Sbjct: 140 QEVAKRMIARHKGDPKKQHRIINIGSVAGLRV-VPELGL-YCMSKAAVVHMTKAMAVEWG 197 Query: 180 TRGVRVNAVAPTYIATPL-LQELEKEQALISRWLDLTPQQRMGRPEEIAAVVAFLASDAA 238 G+ NA+ P YI T + L + EQ + L + P++R+G+PE++ ++ LA++ + Sbjct: 198 KFGINTNAICPGYIGTEMNLDYFQSEQG--QQVLGMLPRKRLGKPEDLDGLLLLLAAEES 255 Query: 239 SLITGAVINADGGYT 253 I GA++ AD G + Sbjct: 256 HFINGAIMTADDGLS 270 >gi|152981493|ref|YP_001353708.1| short-chain dehydrogenase [Janthinobacterium sp. Marseille] Length = 246 Score = 122 bits (307), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 91/251 (36%), Positives = 136/251 (54%), Gaps = 17/251 (6%) Query: 11 LSSLSARLALVTGAGQGIGAACADALARQGATVI------CTDLDGERARATASRLGSSA 64 +S + ++A++TGA +GIGAA A+ LA+ G V+ T+ D A+ A++ A Sbjct: 1 MSKQTKKVAIITGASRGIGAAIAERLAQDGFAVVINYASSATEADALVAKLQAAQ--HEA 58 Query: 65 QAFALDVTDSSALNNL----AARLPALDVLVCNAGVVSNTPAEEMSDEEWERVLSVNLGG 120 A DV +S+ + L +L +DVL+ NAG++ E SDE +ER S+N+ G Sbjct: 59 IAVKADVANSADVRRLFDETEQKLGKVDVLINNAGILQMASLAETSDELFERTFSINVRG 118 Query: 121 VFKTCRAFARAMLARGRGAIVNIGSMSGMIVNVPQPQCHYNASKAAVHHLTRSLAVEWAT 180 F T R A + GR +VN S + + +++P Y SKAAV LT A E Sbjct: 119 TFNTLREAATRLNDGGR--VVNFSSTT-VAMSLPNYSV-YTGSKAAVEVLTPIFAKEMRG 174 Query: 181 RGVRVNAVAPTYIATPLLQELEKEQALISRWLDLTPQQRMGRPEEIAAVVAFLASDAASL 240 R + VNAVAP +AT L K +A I + ++ P QR+G+P++IAA V+FL Sbjct: 175 RNITVNAVAPGPVATDLFFN-GKTEAQIQQLANMPPLQRLGQPDDIAAAVSFLVGRDGGW 233 Query: 241 ITGAVINADGG 251 I G V+ A+GG Sbjct: 234 INGQVLRANGG 244 >gi|152982667|ref|YP_001354167.1| glucose-1-dehydrogenase, (3-oxoacyl-(acyl carrier protein) reductase) [Janthinobacterium sp. Marseille] Length = 258 Score = 120 bits (301), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 86/251 (34%), Positives = 132/251 (52%), Gaps = 10/251 (3%) Query: 11 LSSLSARLALVTGAGQGIGAACADALARQGATVICTDLDGERARATASRLGSSAQAFALD 70 ++S S+++A+VTG G GIG A L + GA V+ D + + A+ + S Sbjct: 1 MNSFSSKVAIVTGGGSGIGKEVAARLVKAGANVVIGGRDAAKLQRVATEIDPSGDHVRFH 60 Query: 71 VTD------SSALNNLAAR-LPALDVLVCNAGVVSNTPAEEMSDEEWERVLSVNLGGVFK 123 D ++AL +LA + +D+L+ NAGV E+ + E++ L L G F Sbjct: 61 AGDIAQPATATALVDLAKQAFGGVDILINNAGVFRPKAFLEVEEAEYDWFLDTILKGKFF 120 Query: 124 TCRAFARAMLARGRGAIVNIGSMSGMIVNVPQPQCHYNASKAAVHHLTRSLAVEWATRGV 183 +A A+AM RG GAIV GS+ + P Y+A+ A VH LTR+LA+E A + Sbjct: 121 MAQAAAKAMKLRGGGAIVQTGSLWALQAIGATPSAAYSAANAGVHALTRNLAIELAASNI 180 Query: 184 RVNAVAPTYIATPLLQEL---EKEQALISRWLDLTPQQRMGRPEEIAAVVAFLASDAASL 240 R+N VAP + TP+ ++ +A + + P R G+P ++A + FLAS AS Sbjct: 181 RINTVAPGVVETPVYNTFMTDDQVKATLPAFNAFHPLGRNGQPADVAEAILFLASANASW 240 Query: 241 ITGAVINADGG 251 ITG V++ DGG Sbjct: 241 ITGTVLSVDGG 251 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.129 0.374 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 519,422 Number of extensions: 18057 Number of successful extensions: 150 Number of sequences better than 1.0e-08: 23 Number of HSP's gapped: 104 Number of HSP's successfully gapped: 23 Length of query: 255 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 174 Effective length of database: 921,564 Effective search space: 160352136 Effective search space used: 160352136 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)