BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2511.p (488 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrog... 327 8e-91 gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde deh... 164 1e-41 gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogen... 139 3e-34 >gi|152979948|ref|YP_001354595.1| succinate-semialdehyde dehydrogenase (NADP+) [Janthinobacterium sp. Marseille] Length = 490 Score = 327 bits (839), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 182/480 (37%), Positives = 289/480 (60%), Gaps = 16/480 (3%) Query: 8 LSGQLFAAGQFIEGQGARLQVRNPARNAVIGQIAVATPDEIAAAVAAAVAAWRAWAGAPA 67 L + G ++ G+ A V NPA + I + E A+ AA AA+ AWA Sbjct: 15 LRNHAYINGAWVTGK-ASFDVNNPADGSKITDVPNLGAQETEQAIQAAHAAFPAWAAKTG 73 Query: 68 RVRAEALHTLGRLILADAPAMAEVMTLEQGKPCNEALGEIKKLAEACHFYAEEAVRVHGE 127 + RA + LI+A+A +A +MT EQGKP E+ GE+ A ++AEEA RV G+ Sbjct: 74 KERAGIMRIWFDLIIANADDLAALMTAEQGKPLIESRGEVIYGASFIEWFAEEAKRVSGD 133 Query: 128 VVPNDQPGYQSLVLREAIGVVAAITPWNYPAELVGWKLCAAVAAGCAVIIKPSEFTPFTA 187 V+ + +++ +++ IGV A+ITPWN+P ++ K+ A+AAGC ++IKP+E TP +A Sbjct: 134 VMASTWSDKRTVTIKQPIGVCASITPWNFPIAMITRKVAPAIAAGCTIVIKPAEQTPLSA 193 Query: 188 LYIAQKVQQAGIPPGIVTVLTGD---GATVGQALVAHPDIAKIAFTGSSQTGLRIQQSC- 243 L IA+ +AGIPPG++ V+T D VG+ L + P + ++FTGS+ G + + C Sbjct: 194 LAIAELAHRAGIPPGVINVVTSDSDQSIAVGKVLCSSPIVRHVSFTGSTPVGRILMEQCA 253 Query: 244 PSIKRLSLELGGNCPLLVTRHADLDQAVQGAVRRSFRNMGQICIAINRIYVERVVYADFL 303 P++K++ LELGG+ P +V ADLD AV GA++ +RN GQ C+ NR YV +Y F+ Sbjct: 254 PTVKKIGLELGGHAPFIVFDDADLDAAVVGALQSKYRNAGQTCVCTNRFYVHESIYDTFV 313 Query: 304 ARFAVAARALVIGDGLSHPAADLGSMAQAAPLQKTLAHLEDALAQGARLITGGAAPAGEE 363 + A + +G+G+ G + A ++K H+ DA+++GA++ITGG A Sbjct: 314 QKLGAGAAKIKVGNGVEQGVLQ-GPLIDAQAVKKVEQHVSDAVSKGAKVITGGKQHA--- 369 Query: 364 FVNGLFFQPTIVADCTPQMRVMREETFGPLVGVAPFDSLAEALALANDSPYGLAAYVYTQ 423 + G F++PT++++ +P M +M EETFGP+ V F + EA+A AND+ +GLA+Y Y++ Sbjct: 370 -LGGYFYEPTVLSNISPDMLIMHEETFGPVAAVIKFKTEDEAVAAANDTDFGLASYFYSR 428 Query: 424 DLQEIHRCAAALDVGNVAINHVDAGIMN---APYGGRKQSGIGVEHAREGLLEYFQFKHV 480 D+ + R A L+ G V IN G+++ AP+GG KQSG+G E ++ G+ EY + K++ Sbjct: 429 DIGRVWRVAEKLEYGMVGIN---TGLISNEVAPFGGVKQSGLGREGSKYGIEEYLEIKYL 485 >gi|152980306|ref|YP_001355332.1| methylmalonate-semialdehyde dehydrogenase [Janthinobacterium sp. Marseille] Length = 505 Score = 164 bits (414), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 141/481 (29%), Positives = 224/481 (46%), Gaps = 12/481 (2%) Query: 13 FAAGQFIEGQGARLQ-VRNPARNAVIGQIAVATPDEIAAAVAAAVAAWRAWAGAPARVRA 71 + G+ E G R Q V NPA Q+ +A+ ++ A VA A AA AWA RA Sbjct: 10 YINGRLTETAGGRQQDVFNPATGEASAQVVLASDADVQAVVATAKAAAPAWADTAPLKRA 69 Query: 72 EALHTLGRLILADAPAMAEVMTLEQGKPCNEALGEIKKLAEACHFYAEEAVRVHGEVVPN 131 L LI +A +T E GK ++A GE+ + E F + + N Sbjct: 70 RILFKFKDLIEKHHDDLAAAITREHGKVFSDAKGEVTRGLEVVEFACGVPQLLKTQFTDN 129 Query: 132 DQPGYQSLVLREAIGVVAAITPWNYPAELVGWKLCAAVAAGCAVIIKPSEFTPFTALYIA 191 G + LR+ +GV A ITP+N+P + W A+A G I+KPSE P +L +A Sbjct: 130 IGGGIDNWNLRQPLGVTAGITPFNFPFMVPMWMAPVALATGNTFILKPSERDPSPSLMVA 189 Query: 192 QKVQQAGIPPGIVTVLTGDGATVGQALVAHPDIAKIAFTGSSQTGLRIQQSCPSIKRLSL 251 + +QQAG+P G+ VL GD V L+ HPD+ ++F GS+ I + + K S Sbjct: 190 ELLQQAGLPDGVFNVLQGDKLAV-DGLLQHPDVKAVSFVGSTPIAEYIYATGAARKGGSY 248 Query: 252 EL------GGNCPLLVTRHADLDQAVQGAVRRSFRNMGQICIAINRIYVERVVYADFLAR 305 L G L+V A+L+QAV + ++ + G+ C+AI+ + +A Sbjct: 249 PLRVQALGGAKNHLVVMPDANLEQAVDALIGAAYGSAGERCMAISVAVAVGDIADKLVAA 308 Query: 306 FAVAARALVIGDGLSHPAADLGSMAQAAPLQKTLAHLEDALAQGARLITGGAAPAGEEFV 365 ++L + +G+ A++G + AA K +++ + GA+L+ G Sbjct: 309 LIPRVKSLKVKNGM-EADAEMGPVVSAAHKAKIEGYIDAGVKAGAKLLVDGRGLKVAGHD 367 Query: 366 NGLFFQPTIVADCTPQMRVMREETFGPLVGVAPFDSLAEALALANDSPYGLAAYVYTQDL 425 G F + TP+M + +EE FGP++ V + A AL L N +G ++T D Sbjct: 368 KGFFLGGCLFDHVTPEMTIYQEEIFGPVLCVLRVPNFAAALELINRHEFGNGVSLFTSDG 427 Query: 426 QEIHRCAAALDVGNVAIN-HVDAGIMNAPYGGRKQSGIGVEHA--REGLLEYFQFKHVRL 482 + ++VG V IN + + +GG K+S G HA EG+ Y ++K + Sbjct: 428 NTAREFSRRVEVGMVGINVPIPVPMAWHSFGGWKRSMFGDTHAYGEEGIKFYTRYKSIMQ 487 Query: 483 R 483 R Sbjct: 488 R 488 >gi|152980627|ref|YP_001353009.1| bifunctional proline dehydrogenase /delta-1-pyrroline-5-carboxylate dehydrogenase [Janthinobacterium sp. Marseille] Length = 1242 Score = 139 bits (351), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 133/472 (28%), Positives = 213/472 (45%), Gaps = 49/472 (10%) Query: 11 QLFAAGQFIEGQGARLQVRNPARNA-VIGQIAVATPDEIAAAVAAAVAAWRAWAGAPARV 69 Q AA + A ++VRNPA +A V+G + A + A+ A + W P Sbjct: 585 QWRAAPSCTQVSSACIEVRNPANHADVVGTVQQADAAVLELALQHATSGINTWQAKPIAE 644 Query: 70 RAEALHTLGRLILADAPAMAEVMTLEQGKPCNEALGEIKKLAEACHFYAEEAVRVHGEVV 129 RA L L A + ++ E GK A+GE+++ + +Y+ +A+ Sbjct: 645 RAAILLQAADLFQQHATELIALLVREAGKTLPNAIGELREAIDFLRYYSAQAIASDA--- 701 Query: 130 PNDQPGYQSLVLREAIGVVAAITPWNYPAELVGWKLCAAVAAGCAVIIKPSEFTPFTALY 189 +QP +G+VA I+PWN+P + ++ AA+AA V+ KP+E TP A Sbjct: 702 --NQP----------LGLVACISPWNFPLSIFTGQVSAALAAANVVLAKPAEQTPLIACR 749 Query: 190 IAQKVQQAGIPPGIVTVLTGDGATVGQALVAHPDIAKIAFTGSSQTGLRI-----QQSCP 244 Q + QAG+P + L G G T+G LV P ++ + FTGS+Q I Q+S Sbjct: 750 AVQLLHQAGVPENALLFLPGSGETIGAQLVTDPRVSAVVFTGSTQVAQSIQRKLVQRSIS 809 Query: 245 SIKRLSL--ELGGNCPLLVTRHADLDQAVQGAVRRSFRNMGQICIAINRIYVERVVYADF 302 K + L E GG ++V A +Q V+ + +F + GQ C A+ + ++ + Sbjct: 810 EGKDIPLIAETGGQNTMIVDSSALCEQVVRDVISSAFDSAGQRCSALRVLCLQDDIAEQT 869 Query: 303 LARFAVAARALVIGDGLSHPAADLGSMAQAAPLQKTLAHLEDALAQGARLITGGAAPAGE 362 L A + L IG H A D+G + A + AHL+ + Q A AG+ Sbjct: 870 LQMLHGAMQELRIGRP-DHLATDVGPVIDA----EAQAHLQAYIRQ--------AQAAGK 916 Query: 363 E-------FVNGLFFQPTIVADCTPQMRVMREETFGPLVGVAPF--DSLAEALALANDSP 413 + NG F P I+ + ++ E FGP++ V + D L + L N + Sbjct: 917 QVRQLPLPVTNGSFVAPCIIE--IADINELQREVFGPVLHVLRYRRDDLPQLLMDINSTG 974 Query: 414 YGLAAYVYTQDLQEIHRCAAALDVGNVAINH--VDAGIMNAPYGGRKQSGIG 463 +GL ++T+ + I VGN+ +N V A + P+GG SG G Sbjct: 975 FGLTLGIHTRIDETIDYVVRHAQVGNIYVNRNIVGAVVGVQPFGGEGLSGTG 1026 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,033,154 Number of extensions: 41193 Number of successful extensions: 154 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 143 Number of HSP's successfully gapped: 3 Length of query: 488 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 401 Effective length of database: 899,382 Effective search space: 360652182 Effective search space used: 360652182 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)