BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2510.p
         (509 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacter...   136   3e-33

>gi|152980629|ref|YP_001351958.1| glycerol kinase [Janthinobacterium
           sp. Marseille]
          Length = 498

 Score =  136 bits (343), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 131/472 (27%), Positives = 208/472 (44%), Gaps = 30/472 (6%)

Query: 1   MRACLLGIDLGTSACKALLLSTEGRILASASAGYPVSQPHQRWVEQEPQAWIAAARLAVA 60
           M   +L ID GT++ +A+L + EG+I   A   YP   P   WVE +  A I  ++LAVA
Sbjct: 1   MSQFILAIDQGTTSSRAILFNHEGQIHGVAQQEYPQIFPEPGWVEHDANA-IWNSQLAVA 59

Query: 61  QAM---QSAGAVQLLSIGLSGQMHGLTALDAQY-RTLRPAILWNDQRNEMEAAEITQAAG 116
           + +       A  + +IG++ Q       D +  + +  AI+W D+R      ++ +A G
Sbjct: 60  RQVLKENKLSATDIAAIGITNQRETTVIWDRKTGQPIANAIVWQDRRTAAYCDQL-RAEG 118

Query: 117 GLSALLAQTGNRMLVGYTGGKLLWMQKHEPHLYARLR---VVLNPKD-YLRYVLTGEIAT 172
                  +TG  +   ++G K+ W+  H P   AR     +     D +L Y L+G   T
Sbjct: 119 KADLFQQKTGLVLDSYFSGTKVKWLLDHIPDARARAERGELAFGTIDSWLVYKLSGAHLT 178

Query: 173 EVSDASGTGLFDVRQRRWADDLIRAAGLDPAHWPACHESQVVSGKVHAQAASLFGIAPGI 232
           + S+AS T LF++   +W ++L+    +  +  PA   S  ++   H +   LFG AP I
Sbjct: 179 DSSNASRTLLFNIHTLQWDEELLAIFDIPASLLPAVVASSGIASHTHTE---LFG-AP-I 233

Query: 233 PVIGGGGDSVIQSLGAGVVAPGGWQTTIGT-------AGILAAALERPLSSPDGRIQVFC 285
            + G  GD    + G     PG  + T GT        G  A +    L +  G      
Sbjct: 234 AIAGIAGDQQAATFGQACHKPGMAKNTYGTGCFMLLNTGTHAISSHNNLLTTIGWTLGIG 293

Query: 286 NVAPDRWHAMGVSLNAGGALAWWRSAMQSPDSEEAPSFEAIVQAAAQSLPGARGLLFLPY 345
             A   +   G     G  + W R  +            A V+A A S+P   G++F+P 
Sbjct: 294 KAAQTNYMLEGGVFMGGAIVQWLRDGLGIIQRS------ADVEALATSVPDNGGVVFVPA 347

Query: 346 LNGERCPHPDPAARAAFIGLTARHGFADLARSVLEGVVHSLCD-MHALMSAMGVAPGWVS 404
            +G   P+ D  AR   +G+T     A +AR+ LE + +   D + A+      +   + 
Sbjct: 348 FSGLGAPYWDSYARGTILGMTRGSNKAHIARAALESIAYQSVDLLDAMQKDAQSSSQELR 407

Query: 405 TSGGGARSAQWRQIQADMLECEVVTREGAAEGAALGAALLAGVGLQIWPDVE 456
             GG +R+    Q QAD+L   V+ R    E  ALGAA LAG+ +  W   E
Sbjct: 408 VDGGASRNDLLMQFQADILNVPVI-RPVVTETTALGAAYLAGLAVSFWQSAE 458


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.133    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,078,448
Number of extensions: 38756
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 138
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 1,221,021
Length adjustment: 87
Effective length of query: 422
Effective length of database: 899,382
Effective search space: 379539204
Effective search space used: 379539204
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)