BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2509.p
         (238 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981574|ref|YP_001351926.1| phosphoglycolate phosphatase [J...    90   1e-19
gi|152981556|ref|YP_001354369.1| phosphoglycolate phosphatase [J...    72   2e-14

>gi|152981574|ref|YP_001351926.1| phosphoglycolate phosphatase
           [Janthinobacterium sp. Marseille]
          Length = 223

 Score = 90.1 bits (222), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 62/193 (32%), Positives = 86/193 (44%), Gaps = 7/193 (3%)

Query: 10  QAFIFDLDGTLIDSAPDIAAAVNAYLQEQGHAALEVAYVERFIGNGPRRLIEDILIDQEI 69
           +  I DLDGT++ +A D+  A+N      G A L++     F+G G   L+   +    +
Sbjct: 6   RGVIIDLDGTMLHTAQDLHIAINRMRAGLGLAPLDLDTAISFVGKGAENLVRKTI---GV 62

Query: 70  AFDGAGLE----AAVAAYIGHYQRHPASHTRFFPYVKEDLASLHAAGIRLGICTNKPHAL 125
            F  + +E     A+A +  HY          +P V E L  + A G+RL   TNKP A 
Sbjct: 63  DFSDSEVEQRFAEAMALFEQHYFDVNGEFATAYPGVHEGLQEMQAKGLRLACVTNKPIAF 122

Query: 126 TRQILDLLQLSPLVEVALGADAVPACKPDPGHLRAVAAHMALAPGSWAYIGDTTVDQATA 185
           T  +L    L    E+  G D+    KPDP  L  V A   LAP     IGD+  D   A
Sbjct: 123 TLPLLKKTGLHDYFEIIYGGDSFAKKKPDPMQLLQVCADFELAPAQIVAIGDSINDSQAA 182

Query: 186 AAADAPFFVVPWG 198
            AA      VP+G
Sbjct: 183 RAAGCKVLAVPYG 195


>gi|152981556|ref|YP_001354369.1| phosphoglycolate phosphatase
           [Janthinobacterium sp. Marseille]
          Length = 219

 Score = 72.4 bits (176), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 84/194 (43%), Gaps = 8/194 (4%)

Query: 7   RRYQAFIFDLDGTLIDSAPDIAAAVNAYLQEQGHAALEVAYVERFIGNGPRRLIEDI--L 64
           R  QA +FDLDGTL D+APD+A AVN     +G    +   +      G R LI     L
Sbjct: 4   RTPQAILFDLDGTLADTAPDLAGAVNQLRIARGLEPTDYELLRPTASAGARGLIGAAFGL 63

Query: 65  IDQEIAFDGAGLEAAVAAYIGHYQRHPASHTRFFPYVKEDLASLHAAGIRLGICTNKPHA 124
             Q+  +          A++ +Y++  A  +R F  V E LA L A GI  GI TNK   
Sbjct: 64  TPQDAEY-----PELRDAFLKNYEQSIAVESRLFDGVTELLAQLQAEGIVWGIVTNKVSY 118

Query: 125 LTRQILDLLQLSPLVEVALGADAVPACKPDPGHLRAVAAHMALAPGSWAYIGDTTVDQAT 184
           LT +++  + L     V  G D     KP P  L   A  + + P    Y+GD   D   
Sbjct: 119 LTDRLVPQIGLDHAACVISG-DTASHPKPHPAPLFEAAKRIGIDPEHCWYVGDDLRDIQA 177

Query: 185 AAAADAPFFVVPWG 198
             AA        WG
Sbjct: 178 GQAAGMTTIAAGWG 191


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.136    0.407 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 563,045
Number of extensions: 22909
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 238
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 158
Effective length of database: 925,261
Effective search space: 146191238
Effective search space used: 146191238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)