BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2508.p
         (279 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980245|ref|YP_001354004.1| RpiR family transcriptional reg...   134   7e-33

>gi|152980245|ref|YP_001354004.1| RpiR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 286

 Score =  134 bits (337), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 82/254 (32%), Positives = 134/254 (52%)

Query: 5   LLQQIVREQEEMKPAELRIAHFVSQAPGEVIHMSMASLAERCAVSDPTIVRFCRRFGFNG 64
           LL  I  + + +  +E ++A  V + P   I  ++ +LA++  VS+PT+VRFCR  GF+G
Sbjct: 2   LLDSIRTQYDSLSKSEKKVALAVLEQPELAIAENITALAKKAEVSEPTVVRFCRAIGFDG 61

Query: 65  YQEFKLNLAQSLVPAAPFVYEQITRDDDIDTIVRKTCRNSLSAIQRALDDLVPQQIEQAA 124
           +Q FKL LAQ L  A     E    +D    +V K C  S++ +    + L    IEQA 
Sbjct: 62  WQAFKLKLAQGLALAPGTGDESPMLEDMAADLVDKVCNRSINTLLDLRNSLDANAIEQAL 121

Query: 125 ALLHSATWIGIYASGISEITALDAEHKFQRLGLRCAAVMEEKKQWMHAEKSRPNEVALIF 184
            +L  A  I  Y  G S I A DA+HKF R G+   A  +     + A   +  +V +  
Sbjct: 122 QVLGRANTIEFYGQGTSGIIAADAQHKFFRSGVPTVAYSDPHIHSIAASLLKKGDVVVAI 181

Query: 185 SQSGHTKRMVELAMAARAGGARVVAVTAADSPLAQVTDALIAVLPYDQTEFMTPLASRLN 244
           SQ G +  ++     AR+ GA +V +  + +PLA++   LI +  +  T+  TP+++RL 
Sbjct: 182 SQRGSSLSLLRSVQLARSSGAAIVVLAPSGTPLAELATVLIPIDLHFHTDPYTPISARLA 241

Query: 245 HHLVVNMLVTAIAV 258
           H +V+++L   +A+
Sbjct: 242 HLVVIDILAVGLAL 255


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.321    0.130    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 535,724
Number of extensions: 16983
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 197
Effective length of database: 917,867
Effective search space: 180819799
Effective search space used: 180819799
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)