BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2507.p
         (237 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979997|ref|YP_001353998.1| ribose-5-phosphate isomerase A ...   145   2e-36

>gi|152979997|ref|YP_001353998.1| ribose-5-phosphate isomerase A
           [Janthinobacterium sp. Marseille]
          Length = 223

 Score =  145 bits (366), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 93/232 (40%), Positives = 136/232 (58%), Gaps = 10/232 (4%)

Query: 3   LNQNEAKKLAGRHAILEFVRDDMRLGLGSGTTSHFFVRELAKHIADGLNVTCTATSRSTI 62
           + Q+E K+   R AI ++V     +G+G+G+T++FF+ EL K I D +     A+S +T 
Sbjct: 1   MTQDEMKQAVARAAI-DYVVAGEIIGVGTGSTANFFIDELGK-IKDRIK-GAVASSEATA 57

Query: 63  DVAREVGIPIMDPNEIGQIDLTIDGPDEIDREFRMIKGGGACLLWEKIIAHASTRMITIC 122
           +  R  GI I D N+I  + + IDG DEI  +  MIKGGGA L  EKI+A  + + + I 
Sbjct: 58  ERLRAHGITIFDLNDIDSMSVYIDGADEITAQGAMIKGGGAALTREKIVASVAKKFVCIA 117

Query: 123 DESKLVEHLGAFPLPVEVVQFAWKQTERRVAGLLREFGIDARIVRRSRDERPVVTDSGHF 182
           D SKLV+ LG FPLPVEV+  A     R++A L    G + R+  R +D + VVTD+G +
Sbjct: 118 DGSKLVDKLGKFPLPVEVIPMAQAVVARKLAAL----GGEPRL--RVKDGKAVVTDNGCY 171

Query: 183 ILDCHCQVIDGAELLETELNRIPGVVENGLFTREAAGM-VVGCFDGTSYVSL 233
           I+D     I+    LE ++N I GVV  GLF R  A + ++G  DG + +S 
Sbjct: 172 IIDVLGLQIEDPATLEAQINDIVGVVTVGLFARRGADIALLGTADGVNSLSF 223


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.139    0.414 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 558,004
Number of extensions: 22878
Number of successful extensions: 61
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 1,221,021
Length adjustment: 80
Effective length of query: 157
Effective length of database: 925,261
Effective search space: 145265977
Effective search space used: 145265977
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)