BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2505.p (507 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATP... 216 3e-57 gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transp... 191 9e-50 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 105 6e-24 gi|152981150|ref|YP_001353311.1| ABC-type multidrug transport sy... 105 7e-24 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 101 1e-22 >gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 511 Score = 216 bits (550), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 151/493 (30%), Positives = 257/493 (52%), Gaps = 9/493 (1%) Query: 15 LRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIFLD 74 L + +++KRY + A GI L ++ G IH +LGENGAGKSTL+ +I G P G++ + Sbjct: 5 LELHSITKRYPSVVANDGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDAGKVLWN 64 Query: 75 GEEIQGADVKRMEAAGVFLVPQEPMIIEHMSVMENLMLGLWPAKRGFVAWRRMRENAARM 134 G+E+ A+ G+ +V Q + + ++V+EN+ LGL + RR+ + A + Sbjct: 65 GKEVHIANPAMARELGIAMVFQHFSLFDTLTVVENIALGLPHDTKLDELARRISDTAEQY 124 Query: 135 LAGTGIDAERLAGTLDAVARRKLNILRAMFSGGSIIILDEPTAALTVPDRLQLFAFMRQL 194 G ++ +R TL +++ I+RA+ + ++ILDEPT+ LT +LF +R+L Sbjct: 125 --GLELEPQRHVHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVEKLFETLRKL 182 Query: 195 RASGVTFIFISHFNDEILDICDAVSVLRDGELVATCEEVCSLSSSQLSEFVLGRELDLFQ 254 A G + ++ISH DEI +CD +V+R G+ C+ S++ LS ++G E + Sbjct: 183 AAEGCSILYISHKLDEIRALCDTCTVVRAGKNTGICDPR-EESAASLSRMMIGCEPPPIK 241 Query: 255 RD-RRPAHALVSAEVISLFGVSGLNDDKLCVDRLELQPGEIIGFTGLPGEGAKELARGLF 313 R P L++ + +SL + L EL+ GEI+G G+ G G +EL L Sbjct: 242 HVLRSPGQTLLAVKNLSLKKNHPFATE-LSDINFELRAGEILGIAGVSGNGQQELLAALS 300 Query: 314 GLLPLRSGQ-ISFPREPACSLPQRPDQALAMGIAYLSDDRRRDGVVGHLSIRENIALSSL 372 G P Q I E P Q G+ ++ ++R G V +S+ +NI LS Sbjct: 301 GEDPRAEAQMILLQGERVGHF--NPAQRRERGLGFVPEERLGRGAVPDMSLADNILLSHQ 358 Query: 373 P-RRLRAGLVDEGEERQVCTSYFRRMGIKADSAEDAVNTLSGGNQQKVCLGRVLATLPRL 431 + +G + + ++ T R +KA A +LSGGN QK +GR + P++ Sbjct: 359 TGATISSGFIRKHAIVKMATDVIERFVVKAGGPHAAARSLSGGNLQKYIVGREVMRNPKV 418 Query: 432 LILDEPTRGIDVGVKQDVLRILDQLSQAGVSVIIVSTDVDELARAADRICIFQRGRIAHV 491 LI+ +PT G+DVG + L L AG +++++S ++DEL +DR+ + +GR++ Sbjct: 419 LIVAQPTWGVDVGAAAQIRAELVALRDAGCALLVISEELDELFEISDRLMVIAKGRLSPS 478 Query: 492 VSGDDISTDRLRQ 504 ++ + D + Q Sbjct: 479 IASSAATIDLIGQ 491 >gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 523 Score = 191 bits (485), Expect = 9e-50, Method: Compositional matrix adjust. Identities = 162/523 (30%), Positives = 251/523 (47%), Gaps = 47/523 (8%) Query: 15 LRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIFLD 74 L + ++KR+G+ L I+L + G +H LLGENGAGKSTL LI G P G I D Sbjct: 4 LEIAGVTKRFGSHLVLNDISLNVEAGEVHCLLGENGAGKSTLCNLIFGVHRPDAGLIKYD 63 Query: 75 GEEIQGADVKRMEAAGVFLVPQEPMIIEHMSVMENLMLGLWPA--KRGFVAWRRMRENAA 132 G E + + G+ +V Q ++ +MSV+ENLMLG A K+ F+ RRM+E A Sbjct: 64 GGEFRPSGPAHALELGIAMVHQHFSLVSNMSVVENLMLGRAQAILKQDFI-IRRMQELAD 122 Query: 133 RMLAGTGIDAERLAGTLDAVARRKLNILRAMFSGGSIIILDEPTAALTVPDRLQLFAFMR 192 ID + G L R+++ I++ + S +++LDEPTA L + L A R Sbjct: 123 EY--DLKIDPHCIVGDLSVGERQRIEIIKCLLSNPRLLLLDEPTAVLPPEEVDSLLAVCR 180 Query: 193 QLRASGVTFIFISHFNDEILDICDAVSVLRDGELV-ATCEEVCSLSSSQLSEFVLGREL- 250 ++ SG I ++H EI + D SVLR G +V + C E + + L ++GR++ Sbjct: 181 KVAESGRGVILVTHKLAEIAKVADRTSVLRQGRIVESVCMEGADMHA--LVRSMVGRDVK 238 Query: 251 --------------DLFQR------------DRR----PAHALVSAEVISLFGVSGLNDD 280 D Q D R PA L GV+ L+D Sbjct: 239 SGDSVLAATLGILSDAAQDAANATPAAAAVVDSRSLGLPALQLQGLSFQDKDGVTRLSDV 298 Query: 281 KLCVDRLELQPGEIIGFTGLPGEGAKELARGLFGLLPLRSGQISFPREPACSLPQRPDQA 340 L V R GEI+G G+ G G EL + GLL G + + + Sbjct: 299 HLSVAR-----GEIVGIAGVEGNGQSELGAIIAGLLTPTGGAMKIGEQDLTGSSAQDITD 353 Query: 341 LAMGIAYLSDDRRRDGVVGHLSIRENIALSSLPRRLRAGLVDEGEERQVCTSYFRRMGIK 400 GI + +DR + LS+ EN+ L SL + R GL+D + + + ++ Sbjct: 354 AGAGI--IPEDRHAVACISELSVAENLFLGSLEKFSRFGLLDREKMAKQAATMMTEFDVR 411 Query: 401 ADSAEDAVNTLSGGNQQKVCLGRVLATLPRLLIL-DEPTRGIDVGVKQDVLRILDQLSQA 459 A S +++LSGGNQQK L R L+ P + +L +PTRG+DVG + V + + Sbjct: 412 ATSPNAPMSSLSGGNQQKAVLARELSLDPLIFLLAAQPTRGLDVGAVEAVFNRIRTAASN 471 Query: 460 GVSVIIVSTDVDELARAADRICIFQRGRIAHVVSGDDISTDRL 502 G+ V+++S+D++EL +DR+ + RG I + D + +++ Sbjct: 472 GLGVLLISSDLNELIAVSDRVAVLYRGAIVGELPADPANREKI 514 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 105 bits (262), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 73/249 (29%), Positives = 132/249 (53%), Gaps = 12/249 (4%) Query: 13 LALRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIF 72 +++ V+N+ K++G F AL ++L G + LLG +G GK+TL+ +I+G P G++ Sbjct: 1 MSIEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVL 60 Query: 73 LDGEEIQGADVKRMEAAGVFLVPQEPMIIEHMSVMENLMLGL--WPAKRGFVAWRRMREN 130 LDGE+ V+ + VF Q + +HM+V EN+ GL PA + +++E Sbjct: 61 LDGEDASARHVRERQVGFVF---QHYALFKHMTVFENIAFGLRVRPAATR-PSESQIKEK 116 Query: 131 AARMLAGTGID--AERLAGTLDAVARRKLNILRAMFSGGSIIILDEPTAALTVPDRLQLF 188 ++L +D A+R L R+++ + RA+ +++LDEP AL R +L Sbjct: 117 VTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELR 176 Query: 189 AFMRQLRAS-GVTFIFISHFNDEILDICDAVSVLRDG--ELVATCEEVCSLSSSQLSEFV 245 ++R+L VT IF++H +E L++ D + ++ G E + ++V + +S Sbjct: 177 RWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPFVYGF 236 Query: 246 LGRELDLFQ 254 LG ++LF Sbjct: 237 LGN-VNLFH 244 Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/215 (27%), Positives = 99/215 (46%), Gaps = 11/215 (5%) Query: 287 LELQPGEIIGFTGLPGEGAKELARGLFGLLPLRSGQISFPREPACSLPQRPDQALAMGIA 346 L+ GE+ G G G L R + GL GQ+ E A + R Q +G Sbjct: 23 LDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARHVRERQ---VGFV 79 Query: 347 YLSDDRRRDGVVGHLSIRENIALSSLPRRLRAGLVDEGEERQVCTSYFRRMGIKADSAED 406 + + + H+++ ENIA L R A E + ++ T + + A+ Sbjct: 80 F-----QHYALFKHMTVFENIAFG-LRVRPAATRPSESQIKEKVTKLLELVQLDW-LADR 132 Query: 407 AVNTLSGGNQQKVCLGRVLATLPRLLILDEPTRGIDVGVKQDVLRILDQLS-QAGVSVII 465 LSGG +Q++ L R LA PR+L+LDEP +D V++++ R L +L V+ I Sbjct: 133 YPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDDLHVTSIF 192 Query: 466 VSTDVDELARAADRICIFQRGRIAHVVSGDDISTD 500 V+ D +E AD+I + +G + + + D+ + Sbjct: 193 VTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNN 227 >gi|152981150|ref|YP_001353311.1| ABC-type multidrug transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 348 Score = 105 bits (262), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 74/218 (33%), Positives = 115/218 (52%), Gaps = 14/218 (6%) Query: 15 LRVENLSKRYGA-FHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIFL 73 + V+ L+K+Y + F AL+GI L IRRG I LLG NGAGK+TL+ +I G PS G + Sbjct: 45 ISVKGLTKQYASGFQALKGIDLEIRRGEIFALLGPNGAGKTTLISIICGIVNPSSGTVLA 104 Query: 74 DGEEIQGADVKRMEAA--GVFLVPQEPMIIEHMSVMENLMLGLWPAKRGFVAWRRMRENA 131 DG +I V+ AA + LVPQE +V + RG + + Sbjct: 105 DGHDI----VQDYRAARTKIGLVPQELSTDAFETVWATVNFS-----RGIFGKPKDHAHI 155 Query: 132 ARMLAGTGIDAERLAG--TLDAVARRKLNILRAMFSGGSIIILDEPTAALTVPDRLQLFA 189 ++L + ++ + L +R++ I +A+ I+ LDEPTA + V R ++ Sbjct: 156 EKVLRSLSLWEKKDSKIFALSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRRDMWE 215 Query: 190 FMRQLRASGVTFIFISHFNDEILDICDAVSVLRDGELV 227 +R LR SGVT I +H+ +E ++ D + V+R GEL+ Sbjct: 216 MVRGLRESGVTIILTTHYIEEAEEMADRIGVIRKGELI 253 Score = 63.5 bits (153), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 27/87 (31%), Positives = 57/87 (65%) Query: 402 DSAEDAVNTLSGGNQQKVCLGRVLATLPRLLILDEPTRGIDVGVKQDVLRILDQLSQAGV 461 + + + LSGG +++V + + L+ P++L LDEPT G+DV +++D+ ++ L ++GV Sbjct: 166 EKKDSKIFALSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRRDMWEMVRGLRESGV 225 Query: 462 SVIIVSTDVDELARAADRICIFQRGRI 488 ++I+ + ++E ADRI + ++G + Sbjct: 226 TIILTTHYIEEAEEMADRIGVIRKGEL 252 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 101 bits (252), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 70/228 (30%), Positives = 116/228 (50%), Gaps = 14/228 (6%) Query: 15 LRVENLSKRYGAFHALRGITLGIRRGTIHGLLGENGAGKSTLVGLISGQRVPSEGRIFLD 74 L + +SKR+G AL + + I +G I+GL+G NGAGK+T +I+G G L Sbjct: 7 LNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFELA 66 Query: 75 GEEIQGADVKRMEAAGVFLVPQEPMIIEHMSVMENLML--------GLWPAKRGFVAWRR 126 G+ + ++ AG+ Q + M+ +EN+M+ GL+ A A RR Sbjct: 67 GKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAARR 126 Query: 127 ----MRENAARMLAGTGID--AERLAGTLDAVARRKLNILRAMFSGGSIIILDEPTAALT 180 +R+ A +L GI AER A L +R+L I RA+ + ++ LDEP A + Sbjct: 127 EEAEIRQRAMELLEFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMN 186 Query: 181 VPDRLQLFAFMRQLRASGVTFIFISHFNDEILDICDAVSVLRDGELVA 228 ++L L + +++A G T + I H ++ +CD ++VL G+ +A Sbjct: 187 ATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIA 234 Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 17/220 (7%) Query: 287 LELQPGEIIGFTGLPGEGAKELARGLFGLLPLRSGQISFPREPACSLPQRPDQALAMGIA 346 +++ G+I G G G G + GL +G +P P P + GIA Sbjct: 27 IKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFELAGKPYS--PSAPHKVAKAGIA 84 Query: 347 YLSDDRRRDGVVGHLSIRENIALSSLPR----------RLRAGLVDEGEERQVCTSYFRR 396 + R + G ++ EN+ + R +A +E E RQ Sbjct: 85 RTFQNIR---LFGEMTALENVMIGRHVRTHQGLFGAVFHHKAARREEAEIRQRAMELLEF 141 Query: 397 MGIKADSAEDAVNTLSGGNQQKVCLGRVLATLPRLLILDEPTRGIDVGVKQDVLRILDQL 456 +GI A AE LS G+Q+++ + R LAT P+LL LDEP G++ K + +L ++ Sbjct: 142 VGI-AKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELLVKI 200 Query: 457 SQAGVSVIIVSTDVDELARAADRICIFQRGR-IAHVVSGD 495 G +++++ DV + DRI + G+ IA V D Sbjct: 201 KAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPAD 240 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.322 0.139 0.397 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,172,464 Number of extensions: 51879 Number of successful extensions: 483 Number of sequences better than 1.0e-08: 57 Number of HSP's gapped: 382 Number of HSP's successfully gapped: 101 Length of query: 507 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 420 Effective length of database: 899,382 Effective search space: 377740440 Effective search space used: 377740440 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)