BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2503.p
         (564 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152979945|ref|YP_001352025.1| glycolate oxidase (fad-linked s...    63   6e-11
gi|152980854|ref|YP_001353872.1| FAD/FMN-containing dehydrogenas...    56   6e-09

>gi|152979945|ref|YP_001352025.1| glycolate oxidase (fad-linked
           subunit) oxidoreductase protein [Janthinobacterium sp.
           Marseille]
          Length = 495

 Score = 62.8 bits (151), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 46/157 (29%), Positives = 79/157 (50%), Gaps = 8/157 (5%)

Query: 2   ALRETLIEGLCEIVGQAHVLTSAAAKRRY-CRGYRYGRGEALAVVRPGSLRQMWQVLQAC 60
           A + T+++ L  ++ +  VL +    R Y C G        + VV P +  Q+   L+ C
Sbjct: 12  AYQRTVVDALRAVLPERCVLFNEEDTRPYECDGLAAYAQLPMVVVLPDTEEQVIAALKVC 71

Query: 61  HQADVIVICQAANTGLTGGSTPVEEGYDRPVIVLNTLRLRRLYLLDQ-GRQVLTQPGVTL 119
           +   V ++ + A TGL+GG+ P+ +G     IVL+T RL ++  +D   R  + QPGV  
Sbjct: 72  NALKVPIVPRGAGTGLSGGALPIADG-----IVLSTARLNKIVKVDAYARTAVVQPGVRN 126

Query: 120 DQLERRLKPLGREPHSVIGSSCMGASVTGGICNNSGG 156
             +   + PLG   ++   SS +  ++ G +  NSGG
Sbjct: 127 LAISEAVAPLGLY-YAPDPSSQIACTIGGNVAENSGG 162


>gi|152980854|ref|YP_001353872.1| FAD/FMN-containing dehydrogenase
           [Janthinobacterium sp. Marseille]
          Length = 468

 Score = 55.8 bits (133), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/164 (28%), Positives = 79/164 (48%), Gaps = 10/164 (6%)

Query: 15  VGQAHVLTSAAAKRRYCRGYRYG-RGEALAVVRPGSLRQMWQVLQACHQADVIVICQAAN 73
           +G  HVLT AA    Y   +R    G+A AV++P   +++  +++ C++  V ++ Q  N
Sbjct: 12  IGATHVLTEAADTAPYLTDWRRRFTGKARAVLKPADTQELATLVRLCNEYKVPMVPQGGN 71

Query: 74  TGLTGGSTPVEEGYDRPVIVLNTLRLRRLYLLDQGRQVLT-QPGVTLDQLERRLKPLGRE 132
           TGL  G  P E G      +L+  RL R+  +D     +T + G  L  ++      GR 
Sbjct: 72  TGLVLGGIPDESG---TAAILSLTRLNRIRHVDPLNNTVTVEAGCILKNIQAAASDAGRL 128

Query: 133 -PHSVIGS-SCMGASVTGGICNNSGGSLIRRGPAYTQLALYAQV 174
            P S+    SC   ++ G +  N+GG+ + R     +L L  +V
Sbjct: 129 FPLSLAAEGSC---TIGGNLSTNAGGTAVLRYGNTRELCLGLEV 169


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.139    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 1,370,791
Number of extensions: 60581
Number of successful extensions: 140
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 141
Number of HSP's successfully gapped: 2
Length of query: 564
Length of database: 1,221,021
Length adjustment: 88
Effective length of query: 476
Effective length of database: 895,685
Effective search space: 426346060
Effective search space used: 426346060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)