BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2501.p (873 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980286|ref|YP_001353191.1| aconitate hydratase [Janthinoba... 692 0.0 gi|152980460|ref|YP_001353862.1| 3-isopropylmalate dehydratase l... 90 5e-19 gi|152980040|ref|YP_001354033.1| isopropylmalate isomerase large... 87 5e-18 >gi|152980286|ref|YP_001353191.1| aconitate hydratase [Janthinobacterium sp. Marseille] Length = 907 Score = 692 bits (1787), Expect = 0.0, Method: Compositional matrix adjust. Identities = 378/871 (43%), Positives = 533/871 (61%), Gaps = 45/871 (5%) Query: 34 LPYTSRVLAENLVRRCDPATLTDS-LRQLIE----RKRELDFPWFPARVVCHDILGQTAL 88 LP + R++ E+++R CD +T+ +RQL R + P+ ARVV D G L Sbjct: 39 LPVSIRIVLESVLRNCDGKKVTEEHIRQLANWSPNASRTDEIPFVVARVVLQDFTGVPLL 98 Query: 89 VDLAGLRDAIADMGGDPAKVNPVVPVQLIVDHSLAVECGGDDPQAFEKNRAIEDRRNEDR 148 DLA +R MG +P + P+VPV L+VDHS+ ++ A + N +E +RN +R Sbjct: 99 ADLAAMRGVAEKMGKNPKNIEPLVPVDLVVDHSIQIDHF-RQKNALDLNMKLEFQRNNER 157 Query: 149 FHFIDWTKLAFENVDVIPPGNGIMHQINLEKMSPVIHAKDGVAFPDTLVGTDSHTPHVDA 208 + F+ W AF+ V+PPG GI+HQ+NLE ++ +H KD V +PDTLVGTDSHT ++ Sbjct: 158 YQFMKWGMQAFDTFGVVPPGFGIVHQVNLEYLARGVHKKDSVYYPDTLVGTDSHTTMING 217 Query: 209 LGVIAIGVGGLEAENVMLGRASWMRLPDIIGVELTGRRQSGITATDIVLSLTEFLRKQKV 268 +GV+ GVGG+EAE MLG+ + PD++GV LTG+ + G+TATD+VL++TE LRK+KV Sbjct: 218 IGVVGWGVGGIEAEAGMLGQPVYFLTPDVVGVNLTGQLREGVTATDLVLTITEMLRKEKV 277 Query: 269 VGAYLEFYGEGAASLTLGDRATISNMAPEYGATAAMFSIDQQTIDYLKLTGREDEQVKLV 328 VG ++EF+GEG SL+L DRATI+NMAPEYGAT F +D TIDY K TGR ++ Sbjct: 278 VGKFVEFFGEGTESLSLTDRATIANMAPEYGATMGFFPVDDATIDYFKGTGRTKAEIDAF 337 Query: 329 ETYAKEAGLWS-DTLAKAEYERVLRFDLSTVVRTLAGPSNPHKRLPVSEL---------- 377 E+Y K GL+ + +Y V+ DL +V +LAGP P R+ + + Sbjct: 338 ESYFKAQGLYGVPKSGEIDYTHVVALDLGSVAPSLAGPKRPQDRIEIGNVKHNFAELFAK 397 Query: 378 --AAQGIAGKVE--------KEPGKMPDGAVIIAAITSCTNTSNPRNVIAAALLARNANR 427 A G K+E + K+ +G V+IAAITSCTNTSNP ++ A LLA+ A Sbjct: 398 PTAENGFNKKIEDLDATYTNSDGVKVKNGDVLIAAITSCTNTSNPSVLLTAGLLAKKAVE 457 Query: 428 LGLARKPWVKSSLAPGSKAVELYLEEAGLTADLEKLGFGIVAFACTTCNGMSGALDPKIQ 487 GL P +K+SLAPGS+ V YLE AGL LEKLGFG+ A+ CTTC G +G L P + Sbjct: 458 AGLKVSPHIKTSLAPGSRVVTEYLEAAGLLPYLEKLGFGVTAYGCTTCIGNAGDLTPAMN 517 Query: 488 QEIIDRDLYSTAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTIRFDIEQDVL--- 544 + I+ D+ ++AVLSGNRNF+ RIHP + FLASPPLVVAYAIAG + D+ + + Sbjct: 518 EAIVQHDIVASAVLSGNRNFEARIHPNIRSNFLASPPLVVAYAIAGNMTRDLMTEPVGRG 577 Query: 545 -GVTAEGREIRLKDIWPSDEEIDAVVAAAVKPQQFRNVYTPMFAARVDRSQSVS-----P 598 G + R++ L DIWP+ +E+ ++ A+ + F++ Y + A + + Sbjct: 578 KGADGKTRDVYLGDIWPTSQEVAKLMKFAMNAKTFKDNYAQVKTAPGKLWEQIKGVAEGQ 637 Query: 599 LYDWRAQSTYIRRPPYWEGAL----AGARTLTGMRPLAVLGDNITTDHLSPSNAILLDSA 654 +YDW STYI PP++ A A +T R L V GD+ITTDH+SP+ AI S Sbjct: 638 VYDW-PTSTYIAEPPFFNDFTMEPKAAATGITAARALGVFGDSITTDHISPAGAIKDSSP 696 Query: 655 AGEYLAKMGLPEEDFNSYATHRGDHLTAQRATFANPKLFNEMV-KKADGSVQQGSLARLE 713 AG+YL++ G+ + DFNSY + RG+H R TFAN ++ N M+ K DGS +G + + Sbjct: 697 AGKYLSEKGVMKADFNSYGSRRGNHEIMMRGTFANVRIKNLMIPAKPDGSRVEGGVTLFQ 756 Query: 714 PEGRVMRMWETIETYMERKQPLIIIAGADYGQGSSRDWAAKGVRLAGVEAIVAEGFERIH 773 P G M +++ Y+ P ++ AG +YG GSSRDWAAKG +L GV+A++A +ERIH Sbjct: 757 PSGEQMSIYDAAMRYVSEGTPTMVFAGEEYGTGSSRDWAAKGTQLLGVKAVIARSYERIH 816 Query: 774 RTNLIGMGVLPLEFKPGENRNTYAIDGTETYDVI---GQRRPRADLTLVIHRKNGERVEV 830 R+NL+GMGVLPL+F ++ T I G ET+D+ G RP+ ++TLVIHR NGE +V Sbjct: 817 RSNLVGMGVLPLQFLGDDSMTTLGITGDETFDLKGLEGNLRPQQEVTLVIHRANGESRDV 876 Query: 831 PVTCRLDTAEEVSIYEAGGVLQRFAQDFLEA 861 V R+DT EV Y+ GG+L + L A Sbjct: 877 KVLLRIDTPIEVDYYKHGGILPFVLRQLLAA 907 >gi|152980460|ref|YP_001353862.1| 3-isopropylmalate dehydratase large subunit [Janthinobacterium sp. Marseille] Length = 468 Score = 90.1 bits (222), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 119/417 (28%), Positives = 170/417 (40%), Gaps = 75/417 (17%) Query: 155 TKLAFENVDVIPPGNGIMHQINLEKMSPVIHA---KDGVAFPD-TLVGTDSHTPHVDALG 210 ++L E +D G+ + +K ++H + G P T+V DSHT A G Sbjct: 79 SRLQVETLDGNAHEYGLTYFSMRDKRQGIVHVIGPEQGATLPGMTVVCGDSHTSTHGAFG 138 Query: 211 VIAIGVGGLEAENVMLGRASWMRLPDIIGVELTGRRQSGITATDIVLSLTEFLRKQKVVG 270 +A G+G E E+V+ + + + V++ G G+TA DIVL++ + G Sbjct: 139 CLAHGIGTSEVEHVLATQTLLAQKSKAMLVQVDGALPDGVTAKDIVLAVIGKIGTAGGTG 198 Query: 271 AYLEFYGEGAASLTLGDRATISNMAPEYGATAAMFSIDQQTIDYLKLTGRE--------D 322 +EF G SL++ R TI NMA E GA A M ++D TI+Y+K GR D Sbjct: 199 YAIEFAGSTIRSLSMEGRMTICNMAIEAGARAGMVAVDDITINYVK--GRPLSPVGPHWD 256 Query: 323 EQVKLVETYAKEAGLWSDTLAKAEYERVLRFDLSTVVRTLAGPSNPHKRLPVSELAAQGI 382 V+ T +AG +FDL VV A P S + Sbjct: 257 RAVEYWRTLHSDAG--------------AKFDL--VVTLNAAEIKPQVSWGTSPEMVVAV 300 Query: 383 AGKV-----EKEPGKMPDG---AVIIAA----------------ITSCTNTSNPRNVIAA 418 G+V EK+P K DG A+I A I SCTN S ++ AA Sbjct: 301 DGRVPDPDKEKDPTKR-DGMEKALIYMALKPNTPITDIRIDKVFIGSCTN-SRIEDLRAA 358 Query: 419 ALLARNANRLGLARKPWVKSSL-APGSKAVELYLEEAGLTADLEKLGFGIVAFACTTCNG 477 A + R G R VK ++ PGS V+ E GL + GF C+ C Sbjct: 359 AAVVR-----GKYRASNVKLAMVVPGSGLVKEQAEREGLDKIFKAAGFEWREPGCSMCLA 413 Query: 478 MSG-ALDPKIQQEIIDRDLYSTAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAG 533 M+ L+P + NRNF+GR + L SP + A I G Sbjct: 414 MNADRLEPG-----------ERCASTSNRNFEGR-QGAGGRTHLVSPAMAAAAGIEG 458 >gi|152980040|ref|YP_001354033.1| isopropylmalate isomerase large subunit [Janthinobacterium sp. Marseille] Length = 468 Score = 87.0 bits (214), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 98/359 (27%), Positives = 146/359 (40%), Gaps = 58/359 (16%) Query: 200 DSHTPHVDALGVIAIGVGGLEAENVMLGRASWMRLPDIIGVELTGRRQSGITATDIVLSL 259 DSHT ALG + G+G E E+++ + RL D + + + G G + D+VL + Sbjct: 132 DSHTTTYGALGALGFGIGTSEVEHILATQTLVYRLADNMRIRVDGELPVGTSVKDLVLLI 191 Query: 260 TEFLRKQKVVGAYLEFYGEGAASLTLGDRATISNMAPEYGATAAMFSIDQQTIDYLKLTG 319 + Q G +EF G A+L+ R T+ NMA E GA AA+ D T Y+K Sbjct: 192 ISRIGAQGARGYAVEFCGSTIAALSAEARMTLCNMAVEAGARAALIRPDATTFAYIKAHA 251 Query: 320 REDEQVKLVETYAKEAGLWSDTLAKAEYERVLRFDLSTVVRTLAGPSNPHKRLPVSELAA 379 + ++ + L+SD A E + +FD V + ++P + +PV+ Sbjct: 252 TDLDEAAYAQAQQDWQTLYSDEDAAFEVDH--QFDAREVAPYVTWGTSPDQAIPVN---- 305 Query: 380 QGIAGKVEKEPGKMPD----------------GAVIIAA------ITSCTNTSNPRNVIA 417 G +PD GA ++ I SCTN IA Sbjct: 306 -----------GHIPDTAQNDNKALHYMGLSAGASLLGLPIERVFIGSCTNGRIEDLRIA 354 Query: 418 AALLARNANRLGLARKPWVKSSLAPGSKAVELYLEEAGLTADLEKLGFGIVAFACTTCNG 477 A ++A G V++ + PGS AV E+ GL GF C+ C Sbjct: 355 AGIIA------GQHVANGVRAMVVPGSGAVRRQAEQEGLADIFIAAGFEWRQPGCSMCLA 408 Query: 478 MS-GALDPKIQQEIIDRDLYSTAVLSGNRNFDGRIHPYAKQAFLASPPLVVAYAIAGTI 535 M+ L P +R +T NRNF+GR + L SP + A AI G I Sbjct: 409 MNDDVLTPG------ERCASTT-----NRNFEGR-QGREGRTHLMSPAMAAAAAIRGCI 455 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 2,081,082 Number of extensions: 90704 Number of successful extensions: 252 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 244 Number of HSP's successfully gapped: 3 Length of query: 873 Length of database: 1,221,021 Length adjustment: 92 Effective length of query: 781 Effective length of database: 880,897 Effective search space: 687980557 Effective search space used: 687980557 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 134 (56.2 bits)