BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2500.p (240 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152980771|ref|YP_001354254.1| GntR family transcriptional reg... 94 9e-21 gi|152981662|ref|YP_001352127.1| GntR family transcriptional reg... 81 5e-17 gi|152980785|ref|YP_001354230.1| GntR family transcriptional reg... 64 1e-11 gi|152980892|ref|YP_001351781.1| GntR family transcriptional reg... 63 2e-11 gi|152982462|ref|YP_001351801.1| GntR family transcriptional reg... 57 1e-09 >gi|152980771|ref|YP_001354254.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 229 Score = 93.6 bits (231), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 71/205 (34%), Positives = 108/205 (52%), Gaps = 13/205 (6%) Query: 15 ETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPH 74 +T SE + +I+ I G + PG + E LA +G+SR P+REA+ +L ++V P Sbjct: 12 QTRSETLREQIEEMIAVGTLKPGQHLDETVLAERFGVSRTPIREALIQLASMGIVVIRPR 71 Query: 75 VGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTH-----EKDEA 129 GA V + + L+E+F++ LE M RLAA+RMS AE L + TH +D+A Sbjct: 72 RGAIVAEIGPQQLIEMFEVMAELEAMCARLAARRMSPAEHAIL---MATHLACKQARDDA 128 Query: 130 FQAGRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPNRPRQAFA 189 + +Y+ E +FH +I S N L L + R YR NR +F Sbjct: 129 -DSDAYFYKNE---EFHQQIYIGSKNTFLEE-QARALQRRLRPYRRLQLRVRNRVTASFD 183 Query: 190 EHHRILDALADGDGELADLLMRRHI 214 EH ++DA+ +G G+LA L+R+HI Sbjct: 184 EHGAVVDAIIEGKGDLAAELLRQHI 208 >gi|152981662|ref|YP_001352127.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 251 Score = 81.3 bits (199), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 108/209 (51%), Gaps = 3/209 (1%) Query: 13 EGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRV 72 E + L + V +Q I++G + PG K++E E+ GISR PLREA+ L + L+ V Sbjct: 21 ERQRLHDAVVEHLQRLIIEGVLTPGMKLNEREVCERLGISRTPLREAMKVLASEGLIDIV 80 Query: 73 PHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDEAFQA 132 P+ GA V + + E F++ LE ++ LAA+R+S AE+ +++ + A Sbjct: 81 PNRGAFVSKMNDTEIWEAFEMMSGLEALSGELAAERISPAEIADIKVLHQAMLVCRAQND 140 Query: 133 GRGYYQQEGDYDFHYKIIQASGNQILTRILCGELYQLARMYRIQYSATPNRPRQAFAEHH 192 GYY + + H KI +A+ N +L +I +L + R + + + +A EH Sbjct: 141 LPGYYSR--NQTIHNKINEAARNSMLRQIYLSVNRRLLAL-RFKSNFKEEKWDRAINEHD 197 Query: 193 RILDALADGDGELADLLMRRHIGASRRNI 221 ++ AL DG+ ++R+H+ R ++ Sbjct: 198 EMIQALEARDGKRLAGILRQHLLDKRDSV 226 >gi|152980785|ref|YP_001354230.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 232 Score = 63.5 bits (153), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 6/154 (3%) Query: 8 SGAEREGETLSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQN 67 S E GE ++ +R ++ IV ++ PGSKISE L R+ G R PLREA+ RL + Sbjct: 12 SEMEGNGENQAQMAYRILEEMIVTLKLPPGSKISEKALNRSLGFGRTPLREALQRLAIEG 71 Query: 68 LLVRVPHVGARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVL--DTHE 125 + +P G V + L + + ++R LE ++ A R +R +++ R + E Sbjct: 72 NVKILPRSGVIVSDIDLADQLNMIEVRRELE----KIIAGRAARLAMEDQRVIFLKLAGE 127 Query: 126 KDEAFQAGRGYYQQEGDYDFHYKIIQASGNQILT 159 D A Q G E D +F+ I+ + N+ ++ Sbjct: 128 FDRAAQQNDGNIFIETDREFNSLCIETAQNKYVS 161 >gi|152980892|ref|YP_001351781.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 227 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/201 (28%), Positives = 93/201 (46%), Gaps = 13/201 (6%) Query: 17 LSEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVG 76 L++ + +I+ AI+ I PGS ISE L+ I R P+REAI RL ++LL+ +P G Sbjct: 18 LTDIAYEQIEEAIITLRIPPGSVISELTLSEMLNIGRTPIREAIQRLAREHLLLVLPQRG 77 Query: 77 ARVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRRVLDTHEKDEAFQAGRGY 136 V + L ++L + R +E + C+ AA+R E + R+ D A + Sbjct: 78 LLVPEIDLRKQLKLLETRREVERLICKSAARRALPEERERFTRLHDEFIHAAASDDDVAF 137 Query: 137 YQQEGDYDFHYKIIQASGNQI---LTRILCGELYQLARMYRIQYSATPNRPRQAFAEHHR 193 + D +F+ + A+ N+ R++ G R + Y + P A H Sbjct: 138 LR--ADREFNELSLVAARNEFAEGAMRLMHG---LSRRFWYFHYKQAADVPEMARL-HAA 191 Query: 194 ILDALADGD----GELADLLM 210 + A+A GD GE D L+ Sbjct: 192 VAGAIAKGDVNAAGETLDQLL 212 >gi|152982462|ref|YP_001351801.1| GntR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 258 Score = 57.0 bits (136), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 67/144 (46%), Gaps = 6/144 (4%) Query: 18 SEHVFRKIQSAIVQGEIAPGSKISEPELARTYGISRGPLREAIHRLEGQNLLVRVPHVGA 77 SE + +I+ AIV EI PGS ++E L+ G R P+REA+ +L ++LLV P G Sbjct: 35 SERAYLRIEEAIVTMEIQPGSDVNEAFLSDVAGFGRTPVREAVRKLCFEHLLVVKPKRGI 94 Query: 78 RVVSLTLEGLVELFQIRESLEGMACRLAAQRMSRAELDELRR--VLDTHEKDEAFQAGRG 135 V + + L ++R ++ RL Q +R E RR L A QA Sbjct: 95 YVTEVDPVAQLRLLEVRREID----RLVFQNAARRATPEQRRQFALLGENFRRASQAADK 150 Query: 136 YYQQEGDYDFHYKIIQASGNQILT 159 D +F+ + + N+ LT Sbjct: 151 MLFIRNDKEFNELCLNCARNEFLT 174 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.136 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 498,231 Number of extensions: 17627 Number of successful extensions: 75 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 71 Number of HSP's successfully gapped: 9 Length of query: 240 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 159 Effective length of database: 921,564 Effective search space: 146528676 Effective search space used: 146528676 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)