BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2499.p
         (245 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152980799|ref|YP_001354172.1| IclR family transcriptional reg...    65   5e-12

>gi|152980799|ref|YP_001354172.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 352

 Score = 64.7 bits (156), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 57/228 (25%), Positives = 97/228 (42%), Gaps = 16/228 (7%)

Query: 5   QTSTIVDRVLHVLAGVARAGKPVSAKQIAAMVQQPVSTVYRHLASLKKWGLLQEHMNSGT 64
           Q+  I  R+L VL     AG+P+  +QIA      V+ V+ +L S +  G++++  +SG 
Sbjct: 92  QSIEIGFRILDVLR---TAGRPLPLRQIAESAGMAVANVHYYLVSFQAVGVIRQEADSGH 148

Query: 65  FEPGPTGVQLAWGFDQNSNLIGQSREEIISLVQRSGESVGLLVPIN-GQMVCIAMEESDQ 123
           +  GP  ++L     +  ++   +R  +  L    G +V L V  N G  +   +E    
Sbjct: 149 YGLGPYALKLGMAALEQFDVFTAARPVMAELAATVGHTVFLGVWGNRGPTIVYRIEGGTS 208

Query: 124 PLRCSFVKGRAHPLLKGASAKSLLAFMPRKLQQKLVADQL------------GDKPEEVA 171
                   G   PLL  A  ++ LA +PR +  +L+  +L             D P+  A
Sbjct: 209 RPILELRVGSVLPLLNSALGRNFLAHLPRTITGELLKQELKINLDDKHAPSHSDLPQSAA 268

Query: 172 ALEAQLDEIRRRGYSISESEVDLGVWGVSVPIMTSNGRLEGTITLMAP 219
            +E  L  ++  G S     +      +S P+    G +   ITLM P
Sbjct: 269 DIEKMLASVKENGLSRCRDALLPHFTSLSAPVFDHLGEMIAAITLMGP 316


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.317    0.132    0.376 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 519,383
Number of extensions: 19628
Number of successful extensions: 73
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 164
Effective length of database: 921,564
Effective search space: 151136496
Effective search space used: 151136496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)