BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2497.p (221 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate tr... 123 1e-29 gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type tr... 110 5e-26 gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport s... 98 4e-22 gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport s... 78 4e-16 >gi|152982686|ref|YP_001351971.1| ABC-type glutamate/aspartate transport system permease protein [Janthinobacterium sp. Marseille] Length = 228 Score = 123 bits (308), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 72/225 (32%), Positives = 123/225 (54%), Gaps = 18/225 (8%) Query: 2 KLDFSGVWDSWSSLLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYLT 61 LDF + +W LL G T+++T + G + G L+ + RL+ + L + Y+ Sbjct: 3 DLDFEIITRTWPYLLAGLQYTLQLTVVAAFGGVIFGTLLAMARLSSNKTLSL-IAAAYVN 61 Query: 62 LVRGTPLLVQLFLWFFGLP-------------HVGLILPAFVCGILGLGIYSGAYISEIV 108 L+R PLL+ +F ++F +P +G A++ I+ + AY EI+ Sbjct: 62 LMRSIPLLLVIFWFYFLMPIVLQTITGSERPVQLGADRSAYITFIM----FEAAYFCEIM 117 Query: 109 RGSIQSIERGQMEAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLT 168 R IQSI +GQ+ A +LGL YR +M+ V+LPQAF M+P L + I L ++ +LVSLL Sbjct: 118 RAGIQSISKGQVNAGYALGLTYRQSMQLVVLPQAFRNMLPILLTQTIVLFQDVSLVSLLN 177 Query: 169 IADLMHEGEKIISITYRSLETYLVIALIYLVLTTVTTLILRRIEK 213 + D + K+ R +E YL +A++Y VL+ + ++++++K Sbjct: 178 VTDFVGAAVKVAQRDSRVVEMYLFVAIVYFVLSFALSTLVKQLQK 222 >gi|152981390|ref|YP_001351970.1| glutamate/aspartate ABC type transport system permease protein [Janthinobacterium sp. Marseille] Length = 243 Score = 110 bits (276), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 20/232 (8%) Query: 4 DFSGVWDSWSSLLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYLTLV 63 D G W SLL G T+ + + + V+G ++G+GR + +R L+ L Y+ L Sbjct: 12 DGDGTWLE--SLLSGLGWTLAVALFAWIFAFVVGSIVGVGRTSEKRWLVR-LGGAYVELF 68 Query: 64 RGTPLLVQLFLWFFGLPHVGLILPA--------------FVCGILGLGIYSGAYISEIVR 109 R PLLVQ F+W+F +P GL+ PA FV ++ LG ++ + I+E VR Sbjct: 69 RNIPLLVQFFVWYFVVP--GLV-PAVKAWVITLDPTEHQFVTAVVCLGFFTSSRIAEQVR 125 Query: 110 GSIQSIERGQMEAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTI 169 IQ++ RGQ A +LGL R V+LP A+ +IPPL +E + LIKN+A+ + + Sbjct: 126 SGIQALPRGQRNAGYALGLTTAQTYRYVLLPMAYRIIIPPLTSELMNLIKNTAVAYSIGL 185 Query: 170 ADLMHEGEKIISITYRSLETYLVIALIYLVLTTVTTLILRRIEKVLRSEGRV 221 +L ++ +T+R E + LIY+V+ ++ +E+ L G + Sbjct: 186 VELFFRTREMGEMTFRYFEAFGAATLIYVVIAMTANRLMALVERRLAVPGYI 237 >gi|152981388|ref|YP_001351724.1| ABC-type amino acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 218 Score = 98.2 bits (243), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 52/142 (36%), Positives = 83/142 (58%) Query: 59 YLTLVRGTPLLVQLFLWFFGLPHVGLILPAFVCGILGLGIYSGAYISEIVRGSIQSIERG 118 Y+ + +GTPLL+QLFL FFG+ G+ +PA++ L L ++S ++++EI RG +++I RG Sbjct: 56 YIEIFQGTPLLMQLFLVFFGIALFGIEVPAWLAAGLTLTLWSASFLAEIWRGCVEAIPRG 115 Query: 119 QMEAARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEK 178 Q EA+ L + Y MR VILPQA +PP + +IK +A+ S++ +L Sbjct: 116 QWEASSVLAMNYVQQMRYVILPQALRIALPPTIGFSVQIIKGTAVTSIIGFVELSKAATV 175 Query: 179 IISITYRSLETYLVIALIYLVL 200 I + T+ Y L Y +L Sbjct: 176 ITNATFMPFTVYAAAGLFYFIL 197 >gi|152982785|ref|YP_001351725.1| ABC-type amino-acid transport system, permease component [Janthinobacterium sp. Marseille] Length = 223 Score = 78.2 bits (191), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 61/191 (31%), Positives = 102/191 (53%), Gaps = 1/191 (0%) Query: 2 KLDFSGVWDSWSSLLHGTMVTVEITAASLVLGCVLGLLIGLGRLNPQRRLIYGLCTFYLT 61 + +F +D L+ G + TVE+ A VLG +G+ R + R + + + Y+ Sbjct: 4 QFEFLSTFDYSGVLVKGVLTTVELIAVGGVLGVAVGIFGAWARTQ-EPRWLRPVVSAYVE 62 Query: 62 LVRGTPLLVQLFLWFFGLPHVGLILPAFVCGILGLGIYSGAYISEIVRGSIQSIERGQME 121 L+R TP L+QLF FFGLP +G+ + IL + I GAY +EI+R + ++ RGQ+E Sbjct: 63 LIRNTPFLIQLFFIFFGLPSIGVQITEMQAAILAMVINLGAYSTEIIRAGVVAVARGQIE 122 Query: 122 AARSLGLPYRMAMRRVILPQAFVRMIPPLGNEFIALIKNSALVSLLTIADLMHEGEKIIS 181 AA SL + R +IL A ++ P L ++ + ++ SA+ S + + +L I Sbjct: 123 AALSLSMTRVQIFRHIILRPALQKIWPALSSQIVIVMLGSAVCSQIAVEELSFAANFIQG 182 Query: 182 ITYRSLETYLV 192 +R+ E YL+ Sbjct: 183 RNFRAFEAYLI 193 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.329 0.145 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 406,113 Number of extensions: 14291 Number of successful extensions: 78 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 4 Length of query: 221 Length of database: 1,221,021 Length adjustment: 80 Effective length of query: 141 Effective length of database: 925,261 Effective search space: 130461801 Effective search space used: 130461801 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 128 (53.9 bits)