BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2496.p (257 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 246 9e-67 gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type tr... 233 1e-62 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 153 9e-39 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 143 1e-35 gi|152980377|ref|YP_001353978.1| ABC-type phosphate transport sy... 143 1e-35 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 246 bits (628), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 126/242 (52%), Positives = 167/242 (69%), Gaps = 5/242 (2%) Query: 4 PIVEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGLETAEGGTVM 63 P++ + ++KS+G + VLKGI V P +V+ IIG SGSGKST LRC+NGLE+ + G++ Sbjct: 2 PLIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSIS 61 Query: 64 VCGHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGVPRKEAQ 123 V G + +S E L LR +VGM+FQ FNLFPHL+V NI ++P ++GV K+A+ Sbjct: 62 VAGSHLGKS-----ELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDAR 116 Query: 124 EHGLRLLKKVGLEHKAKDYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGE 183 ++ L+KVGL K +P LSGGQ+QRVAIARAL+MEP+ +L DE TSALDPELV E Sbjct: 117 ALAMKNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNE 176 Query: 184 VLQVMQDLAAEGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSAIFTDPREARTRS 243 VL V++ LA EGMT+++VTHEM FAREV D VV M G + E G P IF +P + Sbjct: 177 VLNVVRGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANPATPELKQ 236 Query: 244 FL 245 FL Sbjct: 237 FL 238 >gi|152980589|ref|YP_001351972.1| glutamate/aspartate ABC type transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 241 Score = 233 bits (593), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 121/245 (49%), Positives = 161/245 (65%), Gaps = 5/245 (2%) Query: 5 IVEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGLETAEGGTVMV 64 ++E+ + K +G VL VA VVV+ GPSGSGKST ++ +NGLE + G + V Sbjct: 1 MIELDKVSKWYGNFQVLTDCTTQVAKGDVVVVCGPSGSGKSTLIKTVNGLEPFQQGKITV 60 Query: 65 CGHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLAPTCLRGVPRKEAQE 124 G +V P++NL +LR+ +GMVFQ+F LFPHL++ +N+TLA + +A E Sbjct: 61 DGISVGD-----PKTNLSSLRSRIGMVFQNFELFPHLSISENLTLAQVKVLKRSLPDATE 115 Query: 125 HGLRLLKKVGLEHKAKDYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELVGEV 184 GL+ L +VGL +PG LSGGQ+QRVAIARAL+M+P MLFDEPTSALDPE++ EV Sbjct: 116 RGLKYLDRVGLIAHKDKFPGQLSGGQQQRVAIARALSMDPIAMLFDEPTSALDPEMINEV 175 Query: 185 LQVMQDLAAEGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSAIFTDPREARTRSF 244 L VM LA EGMTM++VTHEMGFA++VA+ V+ MD G IVE F R R R F Sbjct: 176 LDVMVGLAQEGMTMMVVTHEMGFAKKVANRVIFMDKGLIVEDCTKDEFFGTTRSDRARDF 235 Query: 245 LQTML 249 L ++ Sbjct: 236 LAKII 240 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 153 bits (387), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 90/245 (36%), Positives = 138/245 (56%), Gaps = 15/245 (6%) Query: 6 VEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGLETAEGGTVMVC 65 +EVK +QK FG + L + ++ ++GPSG GK+T LR + GLE + G V++ Sbjct: 3 IEVKNIQKQFGNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLD 62 Query: 66 GHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLA----PTCLRGVPRKE 121 G S R + E +VG VFQ + LF H+TV +NI P R + Sbjct: 63 GEDA--SARHVRER-------QVGFVFQHYALFKHMTVFENIAFGLRVRPAATRP-SESQ 112 Query: 122 AQEHGLRLLKKVGLEHKAKDYPGTLSGGQKQRVAIARALAMEPKVMLFDEPTSALDPELV 181 +E +LL+ V L+ A YP LSGGQ+QR+A+ARALA+EP+V+L DEP ALD ++ Sbjct: 113 IKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVR 172 Query: 182 GEVLQVMQDLAAE-GMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPSAIFTDPREAR 240 E+ + ++ L + +T + VTH+ A EVAD +V+M+ G++ + G P ++ +P Sbjct: 173 KELRRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNPASPF 232 Query: 241 TRSFL 245 FL Sbjct: 233 VYGFL 237 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 143 bits (361), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 95/259 (36%), Positives = 144/259 (55%), Gaps = 21/259 (8%) Query: 3 QPIVEVKGLQKSF---GQHL--------VLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCL 51 QP++ +K L+K F G+ + G+ F+VA + + I+G SG GKST R + Sbjct: 18 QPLLMIKDLKKYFPVRGELFQRERKFVHAVDGVSFSVAKGKTLGIVGESGCGKSTTARLI 77 Query: 52 NGLETAEGGTVMVCGHAVVQSGRMMPESNLDALRAEVGMVFQ-SF-NLFPHLTVLDNITL 109 L T + G+++ G V + G + R + MVFQ SF +L P LT+ + + Sbjct: 78 ARLVTPDSGSMIFDGEGVAEFGGI----EFKEFRRNLQMVFQDSFASLNPRLTISETVAY 133 Query: 110 APTCLRGVPRKEAQEHGLRLLKKVGL--EHKAKDYPGTLSGGQKQRVAIARALAMEPKVM 167 P GV + +A E LL +VGL E A YP LSGGQ+QRV IARALA EP+++ Sbjct: 134 GPQA-HGVSKAQATERAHALLARVGLQPEQFASRYPHELSGGQRQRVNIARALAFEPRLV 192 Query: 168 LFDEPTSALDPELVGEVLQVMQDLAAE-GMTMLIVTHEMGFAREVADVVVVMDHGSIVES 226 + DE +ALD + +VL ++Q+L AE +T L ++H++ ++D V+VM G +VE Sbjct: 193 ILDEAVAALDKSVQAQVLNLLQELKAEHDLTYLFISHDLHVVHYISDEVMVMYMGQVVEM 252 Query: 227 GPPSAIFTDPREARTRSFL 245 GP I+ + R TR+ L Sbjct: 253 GPVEDIYGNSRHPYTRALL 271 >gi|152980377|ref|YP_001353978.1| ABC-type phosphate transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 260 Score = 143 bits (361), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 90/255 (35%), Positives = 135/255 (52%), Gaps = 18/255 (7%) Query: 1 MQQPIVEVKGLQKSFGQHLVLKGIDFAVAPSQVVVIIGPSGSGKSTFLRCLNGL------ 54 M + +E+ L +G LK I+ + +V IGPSG GKST LR N + Sbjct: 9 MTKKTLEIANLNFFYGSFQGLKNINLDIHDKKVTAFIGPSGCGKSTLLRTFNRMYDLYPG 68 Query: 55 ETAEGGTVMVCGHAVVQSGRMMPESNLDALRAEVGMVFQSFNLFPHLTVLDNITLAPTCL 114 + AEG +M G +++ G+ +++ LRA+VGMVFQ FP ++V DNI Sbjct: 69 QRAEG-KIMYHGKNILEPGQ-----DVNMLRAKVGMVFQKPTPFP-MSVYDNIAFGVRLY 121 Query: 115 RGVPRKEAQEHGLRLLKKVGLEHKAKDYPG----TLSGGQKQRVAIARALAMEPKVMLFD 170 +P+ E E L K L + KD +LSGGQ+QR+ IAR +A++P V+L D Sbjct: 122 ENLPKGEMDERVEWALNKAALWTEVKDKLHKSGLSLSGGQQQRLCIARGVAVKPDVLLLD 181 Query: 171 EPTSALDPELVGEVLQVMQDLAAEGMTMLIVTHEMGFAREVADVVVVMDHGSIVESGPPS 230 EPTSALDP ++ +++ +L + T+ IVTH M A +D M G +VE G Sbjct: 182 EPTSALDPISTAKIEELISELKGD-YTIAIVTHNMQQAARCSDYTAYMYLGELVEFGETD 240 Query: 231 AIFTDPREARTRSFL 245 IF +P + T+ ++ Sbjct: 241 QIFMNPNKKDTQDYI 255 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 591,866 Number of extensions: 23506 Number of successful extensions: 325 Number of sequences better than 1.0e-08: 64 Number of HSP's gapped: 209 Number of HSP's successfully gapped: 70 Length of query: 257 Length of database: 1,221,021 Length adjustment: 81 Effective length of query: 176 Effective length of database: 921,564 Effective search space: 162195264 Effective search space used: 162195264 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)