BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2490.p
         (308 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981220|ref|YP_001352442.1| hypothetical protein mma_0752 [...   264   6e-72

>gi|152981220|ref|YP_001352442.1| hypothetical protein mma_0752
           [Janthinobacterium sp. Marseille]
          Length = 307

 Score =  264 bits (674), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 122/276 (44%), Positives = 182/276 (65%), Gaps = 3/276 (1%)

Query: 33  YCDQTLELSAAQKNRLLLLAATVRDELQRSGEGSAIISRSAINLDRFQIRYSHAGLAIRN 92
           +CD+  +L+A Q++R+L  AA VR+EL  +   + +ISRS ++L RF IRYSHA +A R+
Sbjct: 34  FCDRAHQLTAGQQDRILRFAAVVREELALADTDTVLISRSGLDLSRFNIRYSHAAIAWRD 93

Query: 93  DSNQSSSWRVRQLFYQCEKDKPDIFDQGIAGFLLDNDSASMAYVSLVFVPGTLGLEMRRA 152
           +      W  RQL+Y CE+++P I+DQG+AGF +  D+ ++ Y+S+V VP      ++ A
Sbjct: 94  EDK---VWTARQLYYACEEERPRIYDQGMAGFAMGIDNPALGYISIVKVPAEAAQMLKEA 150

Query: 153 ALDDTLSSHLLGQHYSANAYPFSTQFQNCNQWLMEMLAFAWGQLSLKDDVRAAAQQWLRQ 212
           ALD      LL   YSANAY +   +QNCNQW+ME +A  WG L    D+R  AQ WL+Q
Sbjct: 151 ALDKQRVLRLLAATYSANAYAYGLNYQNCNQWVMETMAAGWGHLDDGADLRERAQLWLQQ 210

Query: 213 SDYRPTDIEVQHDYLMWASHFIPLLHDEDHPAVNLEKNLYQVTMPASIESFIHRRDPESY 272
           + Y P    V   +LM+AS F+PLLH +DHPA +      ++++P+++E+F+H + P S 
Sbjct: 211 AHYAPEPTPVNSHWLMFASSFVPLLHLDDHPAEDRYALKLKISLPSTVETFVHEQYPSSE 270

Query: 273 RVELCMNEEHIVVHPGWSRIADGCVAASGDRVLPVN 308
           RVE+C + + +VVH GW+ IADGCV   GDRV+P++
Sbjct: 271 RVEICHDGKQVVVHRGWTPIADGCVPGEGDRVIPLD 306


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.134    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 687,371
Number of extensions: 26038
Number of successful extensions: 55
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 225
Effective length of database: 914,170
Effective search space: 205688250
Effective search space used: 205688250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)