BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2486.p (522 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATP... 235 5e-63 gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transp... 225 5e-60 gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 103 3e-23 gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino a... 98 1e-21 gi|152981150|ref|YP_001353311.1| ABC-type multidrug transport sy... 97 3e-21 >gi|152981231|ref|YP_001353367.1| ABC-type transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 511 Score = 235 bits (599), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 168/486 (34%), Positives = 259/486 (53%), Gaps = 21/486 (4%) Query: 14 LTLSGIGKSYAAPVL-DGIDLDLHPGQVLALTGENGAGKSTLSKIICGLVDASAGAMTLD 72 L L I K Y + V DGI+L + PG++ A+ GENGAGKSTL KII G V AG + + Sbjct: 5 LELHSITKRYPSVVANDGINLSVKPGEIHAVLGENGAGKSTLMKIIYGSVKPDAGKVLWN 64 Query: 73 GQPFAPVSRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWIDRKKLAEAARA- 131 G+ + A LGI MV Q +L TL++ EN+ L G KL E AR Sbjct: 65 GKEVHIANPAMARELGIAMVFQHFSLFDTLTVVENIAL-------GLPHDTKLDELARRI 117 Query: 132 --QMEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAMLTNREVELLF 189 E GL EL+P V L +G Q VEI R L+ + LILDEPT++LT + VE LF Sbjct: 118 SDTAEQYGL-ELEPQRHVHTLSVGECQRVEIVRALLAKPQLLILDEPTSVLTPQAVEKLF 176 Query: 190 SRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDIGRYSTEQLVQLMAGEL 249 + +L AEG +I+YISH+L+E++ + D V+R GK D S L ++M G Sbjct: 177 ETLRKLAAEGCSILYISHKLDEIRALCDTCTVVRAGKNTGICDPREESAASLSRMMIG-C 235 Query: 250 TKVDLDAEHRRIGAPLLRIRGLG---RAPLVRPAS---LALHSGEVLGIAGLIGSGRTEL 303 + R G LL ++ L P S L +GE+LGIAG+ G+G+ EL Sbjct: 236 EPPPIKHVLRSPGQTLLAVKNLSLKKNHPFATELSDINFELRAGEILGIAGVSGNGQQEL 295 Query: 304 LRLIFGADRADQGEVFIGDSQQPARIRSPKDAVKAGIAMVTEDRKGQGLLLPQAISVNTS 363 L + G D + ++ + ++ +P + G+ V E+R G+G + +++ N Sbjct: 296 LAALSGEDPRAEAQMILLQGERVGHF-NPAQRRERGLGFVPEERLGRGAVPDMSLADNIL 354 Query: 364 LAN-LGQVSRAGMLDHAAEARVAGEFVKKLRIRSGSVAQAAGELSGGNQQKVVIARWLYR 422 L++ G +G + A ++A + +++ +++G AA LSGGN QK ++ R + R Sbjct: 355 LSHQTGATISSGFIRKHAIVKMATDVIERFVVKAGGPHAAARSLSGGNLQKYIVGREVMR 414 Query: 423 DCPIMLFDEPTRGIDIGAKSDIYRLFAELAAQGKGLLVVSSDLRELMQICDRIAVMSAGR 482 + +++ +PT G+D+GA + I L G LLV+S +L EL +I DR+ V++ GR Sbjct: 415 NPKVLIVAQPTWGVDVGAAAQIRAELVALRDAGCALLVISEELDELFEISDRLMVIAKGR 474 Query: 483 IAETFS 488 ++ + + Sbjct: 475 LSPSIA 480 >gi|152981256|ref|YP_001355254.1| ABC-type uncharacterized transport systems, ATPase component [Janthinobacterium sp. Marseille] Length = 523 Score = 225 bits (573), Expect = 5e-60, Method: Compositional matrix adjust. Identities = 174/531 (32%), Positives = 274/531 (51%), Gaps = 48/531 (9%) Query: 13 LLTLSGIGKSYAAP-VLDGIDLDLHPGQVLALTGENGAGKSTLSKIICGLVDASAGAMTL 71 +L ++G+ K + + VL+ I L++ G+V L GENGAGKSTL +I G+ AG + Sbjct: 3 ILEIAGVTKRFGSHLVLNDISLNVEAGEVHCLLGENGAGKSTLCNLIFGVHRPDAGLIKY 62 Query: 72 DGQPFAPVSRTQAEGLGIRMVMQELNLIPTLSIAENLFLEK----LPRRFGWIDRKKLAE 127 DG F P A LGI MV Q +L+ +S+ ENL L + L + F ++LA+ Sbjct: 63 DGGEFRPSGPAHALELGIAMVHQHFSLVSNMSVVENLMLGRAQAILKQDFIIRRMQELAD 122 Query: 128 AARAQMEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAMLTNREVEL 187 + +DP VGDL +G +Q +EI + L+ + R L+LDEPTA+L EV+ Sbjct: 123 EYDLK--------IDPHCIVGDLSVGERQRIEIIKCLLSNPRLLLLDEPTAVLPPEEVDS 174 Query: 188 LFSRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDDIGRYSTEQLVQLMAG 247 L + ++ G +I ++H+L E+ ++ADR VLR G++V + + LV+ M G Sbjct: 175 LLAVCRKVAESGRGVILVTHKLAEIAKVADRTSVLRQGRIVESVCMEGADMHALVRSMVG 234 Query: 248 ELTK-----------VDLDA---------------EHRRIGAPLLRIRGLGR-----APL 276 K + DA + R +G P L+++GL Sbjct: 235 RDVKSGDSVLAATLGILSDAAQDAANATPAAAAVVDSRSLGLPALQLQGLSFQDKDGVTR 294 Query: 277 VRPASLALHSGEVLGIAGLIGSGRTELLRLIFGADRADQGEVFIGDSQQPARIRSPKDAV 336 + L++ GE++GIAG+ G+G++EL +I G G + IG +Q S +D Sbjct: 295 LSDVHLSVARGEIVGIAGVEGNGQSELGAIIAGLLTPTGGAMKIG--EQDLTGSSAQDIT 352 Query: 337 KAGIAMVTEDRKGQGLLLPQAISVNTSLANLGQVSRAGMLDHAAEARVAGEFVKKLRIRS 396 AG ++ EDR + +++ N L +L + SR G+LD A+ A + + +R+ Sbjct: 353 DAGAGIIPEDRHAVACISELSVAENLFLGSLEKFSRFGLLDREKMAKQAATMMTEFDVRA 412 Query: 397 GSVAQAAGELSGGNQQKVVIARWLYRDCPIMLF-DEPTRGIDIGAKSDIYRLFAELAAQG 455 S LSGGNQQK V+AR L D I L +PTRG+D+GA ++ A+ G Sbjct: 413 TSPNAPMSSLSGGNQQKAVLARELSLDPLIFLLAAQPTRGLDVGAVEAVFNRIRTAASNG 472 Query: 456 KGLLVVSSDLRELMQICDRIAVMSAGRIAETFSRDDWSQERILAAAFSGYV 506 G+L++SSDL EL+ + DR+AV+ G I D ++E+I A SG++ Sbjct: 473 LGVLLISSDLNELIAVSDRVAVLYRGAIVGELPADPANREKI-GAMMSGHL 522 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 103 bits (257), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 70/221 (31%), Positives = 116/221 (52%), Gaps = 11/221 (4%) Query: 12 PLLTLSGIGKSYAA-PVLDGIDLDLHPGQVLALTGENGAGKSTLSKIICGLVDASAGAMT 70 PL+ + + KSY + VL GI +D+ PG+V+A+ G++G+GKSTL + I GL G+++ Sbjct: 2 PLIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSIS 61 Query: 71 LDGQPFAPVSRTQAEGLGIR----MVMQELNLIPTLSIAENLFLEKLPRRFGWIDRKKLA 126 + G + + +++ E +R M+ Q+ NL P LS+ N+ + P + K Sbjct: 62 VAG---SHLGKSELELRNLRLKVGMIFQQFNLFPHLSVGRNIMIS--PMIVKGVSEKDAR 116 Query: 127 EAARAQMEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAMLTNREVE 186 A +E VGL E P L G QQ V IAR L + L+ DE T+ L V Sbjct: 117 ALAMKNLEKVGLSEKFDSFP-DQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVN 175 Query: 187 LLFSRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKL 227 + + + L EG+ +I ++H + + + DR+V + GK+ Sbjct: 176 EVLNVVRGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKV 216 Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 62/235 (26%), Positives = 119/235 (50%), Gaps = 19/235 (8%) Query: 264 PLLRI----RGLGRAPLVRPASLALHSGEVLGIAGLIGSGRTELLRLIFGADRADQGEVF 319 PL+ I + G +++ + + GEV+ I G GSG++ LLR I G + D+G + Sbjct: 2 PLIAIDNVKKSYGSNQVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGSIS 61 Query: 320 IGDS---QQPARIRSPKDAVKAGIAMVTEDRKGQGLLLPQAISVNTSLANLGQVSRAGML 376 + S + +R+ ++ + M+ + Q L P +SV ++ + + G+ Sbjct: 62 VAGSHLGKSELELRN----LRLKVGMIFQ----QFNLFPH-LSVGRNIM-ISPMIVKGVS 111 Query: 377 DHAAEARVAGEFVKKLRIRSGSVAQAAGELSGGNQQKVVIARWLYRDCPIMLFDEPTRGI 436 + A A +A + ++K+ + S +LSGG QQ+V IAR L + +L DE T + Sbjct: 112 EKDARA-LAMKNLEKVGL-SEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSAL 169 Query: 437 DIGAKSDIYRLFAELAAQGKGLLVVSSDLRELMQICDRIAVMSAGRIAETFSRDD 491 D +++ + LA +G L++V+ ++R ++CDR+ M G++ E + +D Sbjct: 170 DPELVNEVLNVVRGLAHEGMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPED 224 >gi|152980136|ref|YP_001354236.1| ABC-type branched-chain amino acid transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 256 Score = 97.8 bits (242), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 68/230 (29%), Positives = 111/230 (48%), Gaps = 14/230 (6%) Query: 13 LLTLSGIGKSYAA-PVLDGIDLDLHPGQVLALTGENGAGKSTLSKIICGLVDASAGAMTL 71 +L ++G+ K + L +++ + GQ+ L G NGAGK+T +I GL A G+ L Sbjct: 6 ILNIAGVSKRFGGLQALSDVNIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFEL 65 Query: 72 DGQPFAPVSRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRR----FGWIDRKKLAE 127 G+P++P + + GI Q + L ++ EN+ + + R FG + K A Sbjct: 66 AGKPYSPSAPHKVAKAGIARTFQNIRLFGEMTALENVMIGRHVRTHQGLFGAVFHHKAAR 125 Query: 128 AARAQ--------MEVVGLGELDPWTPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAM 179 A+ +E VG+ + T L G Q+ +EIAR L + L LDEP A Sbjct: 126 REEAEIRQRAMELLEFVGIAKFAERT-ARHLSYGDQRRLEIARALATDPQLLALDEPAAG 184 Query: 180 LTNREVELLFSRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVC 229 + E L + +++AEG I+ I H ++ + + DRI VL GK + Sbjct: 185 MNATEKLGLRELLVKIKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIA 234 Score = 74.7 bits (182), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 57/235 (24%), Positives = 109/235 (46%), Gaps = 17/235 (7%) Query: 281 SLALHSGEVLGIAGLIGSGRTELLRLIFGADRADQGEVFIGDSQQPARIRSPKDAVKAGI 340 ++ + G++ G+ G G+G+T +I G +AD G + + +P +P KAGI Sbjct: 26 NIKIMQGQIYGLIGPNGAGKTTFFNVITGLYQADTGSFEL--AGKPYSPSAPHKVAKAGI 83 Query: 341 AMVTEDRKGQGLLLPQAISVNTSLANLGQVSRAGMLDHAAEARVAGEFVKKLRIRSGSVA 400 A ++ + L + ++ + + G+ + A ++R R+ + Sbjct: 84 ARTFQNIR----LFGEMTALENVMIGRHVRTHQGLFGAVFHHKAARREEAEIRQRAMELL 139 Query: 401 QAAG----------ELSGGNQQKVVIARWLYRDCPIMLFDEPTRGIDIGAKSDIYRLFAE 450 + G LS G+Q+++ IAR L D ++ DEP G++ K + L + Sbjct: 140 EFVGIAKFAERTARHLSYGDQRRLEIARALATDPQLLALDEPAAGMNATEKLGLRELLVK 199 Query: 451 LAAQGKGLLVVSSDLRELMQICDRIAVMSAGR-IAETFSRDDWSQERILAAAFSG 504 + A+GK +L++ D++ +M +CDRI V+ G+ IAE D ++ A G Sbjct: 200 IKAEGKTILLIEHDVKLMMGLCDRITVLDYGKPIAEGVPADVQKDPAVIEAYLGG 254 >gi|152981150|ref|YP_001353311.1| ABC-type multidrug transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 348 Score = 96.7 bits (239), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 24/229 (10%) Query: 13 LLTLSGIGKSYAA--PVLDGIDLDLHPGQVLALTGENGAGKSTLSKIICGLVDASAGAMT 70 ++++ G+ K YA+ L GIDL++ G++ AL G NGAGK+TL IICG+V+ S+G + Sbjct: 44 IISVKGLTKQYASGFQALKGIDLEIRRGEIFALLGPNGAGKTTLISIICGIVNPSSGTVL 103 Query: 71 LDGQPFAPVSRTQAEGLGIRMVMQELNLIPTLSIAENLFLEKLPRRFGWIDRKKLAEAAR 130 DG R +G +V QEL+ ++ + + G + K Sbjct: 104 ADGHDIVQDYRAARTKIG--LVPQELSTDAFETVWATVNFSR-----GIFGKPK----DH 152 Query: 131 AQMEVVGLGELDPW----TPVGDLGLGHQQMVEIARNLIGSCRCLILDEPTAMLTNREVE 186 A +E V L L W + + L G ++ V IA+ L + L LDEPTA + +VE Sbjct: 153 AHIEKV-LRSLSLWEKKDSKIFALSGGMKRRVMIAKALSHEPQILFLDEPTAGV---DVE 208 Query: 187 L---LFSRIERLRAEGVAIIYISHRLEELKRIADRIVVLRDGKLVCNDD 232 L ++ + LR GV II +H +EE + +ADRI V+R G+L+ +D Sbjct: 209 LRRDMWEMVRGLRESGVTIILTTHYIEEAEEMADRIGVIRKGELILVED 257 Score = 57.8 bits (138), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 53/206 (25%), Positives = 93/206 (45%), Gaps = 23/206 (11%) Query: 282 LALHSGEVLGIAGLIGSGRTELLRLIFGADRADQGEVFIGDSQQPARIRSPKDAVKAGIA 341 L + GE+ + G G+G+T L+ +I G G V + D I A + I Sbjct: 66 LEIRRGEIFALLGPNGAGKTTLISIICGIVNPSSGTV-LADGHD---IVQDYRAARTKIG 121 Query: 342 MVTEDRKGQGLLLPQAISVNTSLANLGQVSRAGMLDHAAEARVAGEFVKKLRIRSGSVAQ 401 +V ++ A +VN S G+ DHA +V +RS S+ + Sbjct: 122 LVPQELSTDAFETVWA-TVNFSRGIFGKPK-----DHAHIEKV---------LRSLSLWE 166 Query: 402 AAGE----LSGGNQQKVVIARWLYRDCPIMLFDEPTRGIDIGAKSDIYRLFAELAAQGKG 457 LSGG +++V+IA+ L + I+ DEPT G+D+ + D++ + L G Sbjct: 167 KKDSKIFALSGGMKRRVMIAKALSHEPQILFLDEPTAGVDVELRRDMWEMVRGLRESGVT 226 Query: 458 LLVVSSDLRELMQICDRIAVMSAGRI 483 +++ + + E ++ DRI V+ G + Sbjct: 227 IILTTHYIEEAEEMADRIGVIRKGEL 252 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.137 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,236,609 Number of extensions: 54596 Number of successful extensions: 532 Number of sequences better than 1.0e-08: 56 Number of HSP's gapped: 414 Number of HSP's successfully gapped: 88 Length of query: 522 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 434 Effective length of database: 895,685 Effective search space: 388727290 Effective search space used: 388727290 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)