BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2481.p (583 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis pro... 466 e-132 gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis pro... 448 e-127 gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis pro... 443 e-125 gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis pro... 425 e-120 gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis pro... 420 e-118 >gi|152981456|ref|YP_001355234.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 466 bits (1200), Expect = e-132, Method: Compositional matrix adjust. Identities = 292/577 (50%), Positives = 390/577 (67%), Gaps = 13/577 (2%) Query: 7 NLKVAVRLAAVFALIVGLLAVVSITAFVKINNINRSIDQIINDRYLKVRWAFDMRDGINE 66 NLK+ RLA F +V +L V+++ AF +++ ++ +I + NDRY K A ++D +NE Sbjct: 3 NLKIGQRLALSFGSVVAVLIVLAVIAFTRLDKLDAAIGMVSNDRYPKTVNAHIIKDTLNE 62 Query: 67 QIKYLRGMAIDINNAAGNEKRFGQMEVAVKQTKEALDKIAARQVTAVGQKKIKAVDEARQ 126 + +R A+ + +AA + +E EALDK+ + G+ IKA+ +AR Sbjct: 63 TARNMRN-ALLMTDAAQIKGELDTIEKGSVTIAEALDKLDRTIKSEKGRTYIKALTDARG 121 Query: 127 VFDTSRAELMALIRAGKGDAANEYVLRKITDAQNKYLDLARAFADSQSSQLSAEGAKAVE 186 F + + +AL+ G A + ++ AQ +Y+ + QS+ + G A E Sbjct: 122 RFTPVKDKFVALVAQGMRAEAQILLFAEVRPAQLEYMLGLDRLVEFQSNLMHKAGEDAHE 181 Query: 187 DGAMAIEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVAENVASGDLTTRIVPHSKD 246 A A ++ S +AV+ S LG+L RSI +PL++AV +A VA GDLT IV SKD Sbjct: 182 VSANAQQLVGILSVIAVIISAFLGFLATRSITRPLSQAVGLARKVADGDLTGTIVVTSKD 241 Query: 247 ETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGSLEETAS 306 ETGQL+QAL+ MN+ LV IV+ VR GTD+IATAS +IA+GNLDLS+RTE+QA SLEETAS Sbjct: 242 ETGQLLQALQDMNNGLVRIVTQVRMGTDTIATASSQIATGNLDLSSRTEEQASSLEETAS 301 Query: 307 AMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVSTMEEINQSSRKIVDIIGV 366 +MEE+TSTV+QNADNARQ+NQ+A +AS++A++GG +V +VV TM IN S+ KIVDIIGV Sbjct: 302 SMEELTSTVKQNADNARQSNQLALTASEVAVRGGAVVSQVVETMGSINDSANKIVDIIGV 361 Query: 367 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIDDSVAK 426 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LIDDSV K Sbjct: 362 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSASAAKEIKTLIDDSVEK 421 Query: 427 VEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQN 486 V GS LV +AGTTM +VV SVR VTDI+ EI+AAS EQ+ GIE+IN+AV QMD+ TQQN Sbjct: 422 VNNGSRLVHDAGTTMAEVVESVRRVTDIMGEITAASQEQTDGIEQINQAVMQMDQVTQQN 481 Query: 487 AALVEQSAAAAKAMQEQAADLAKAISIFKLAEAEMKKTSAPAMVQPQPQPQPIRKPATTM 546 AALVE++AAAA+++Q+QA +L++ +S+FKL +A A + V P +P+ KPA + Sbjct: 482 AALVEEAAAAAESLQDQANNLSQVVSVFKL-DANAVALQATSRV-AAPASRPVSKPAQQI 539 Query: 547 PKARTVTAPARPIVSAPATAPALKAPSRIDDDAWETF 583 A R SA A D D WE F Sbjct: 540 RSANVDKQIVRQRASATAG----------DGDEWEQF 566 >gi|152981467|ref|YP_001352200.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 542 Score = 448 bits (1152), Expect = e-127, Method: Compositional matrix adjust. Identities = 259/524 (49%), Positives = 353/524 (67%), Gaps = 1/524 (0%) Query: 5 FGNLKVAVRLAAVFALIVGLLAVVSITAFVKINNINRSIDQIINDRYLKVRWAFDMRDGI 64 N+K+ +L F ++ LL V+++ + +++ +N SI I DRY K A ++ + Sbjct: 4 IANMKIRQKLTLSFGVVFALLVVITLLSNIQLGQLNNSIKLISKDRYPKTILANSVQIEV 63 Query: 65 NEQIKYLRGMAIDINNAAGNEKRFGQMEVAVKQTKEALDKIAARQVTAVGQKKIKAVDEA 124 N+ LR + + ++ A ++ + + K+ E L+++ A T + + A A Sbjct: 64 NKIALNLRDIMLS-SDPAKIKQLVSDTQASDKKMNEGLEQLRAVAQTEEDNRYVSAAIVA 122 Query: 125 RQVFDTSRAELMALIRAGKGDAANEYVLRKITDAQNKYLDLARAFADSQSSQLSAEGAKA 184 R + +R L+ L + GK A Y+ + Q KY A D Q S ++ G A Sbjct: 123 RDQYVPARDTLLQLAQDGKTAEAKTYLDQVFMPVQVKYFIALDAMFDYQGSLMNVAGDAA 182 Query: 185 VEDGAMAIEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVAENVASGDLTTRIVPHS 244 A + + +++L SI +G+ + RSI +PL AV VA VA GDL+ + + Sbjct: 183 SATSVQARTIINILAGISLLLSIAVGWWVTRSITRPLNTAVGVARRVAQGDLSGPVFVKT 242 Query: 245 KDETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGSLEET 304 +E GQLM AL+ MNDNL +IV+ VR GT +IA ASGEIA GN+DLS+RTEQQA SLEET Sbjct: 243 TNEVGQLMAALKTMNDNLHHIVTQVRNGTGTIANASGEIARGNMDLSSRTEQQASSLEET 302 Query: 305 ASAMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVSTMEEINQSSRKIVDII 364 ASAMEE+TSTVR+NADNA+QANQ+AASA+++A QGG +V V++TM IN SS+KI DI Sbjct: 303 ASAMEELTSTVRENADNAQQANQLAASATKVARQGGSVVHEVIATMAAINTSSKKIADIT 362 Query: 365 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIDDSV 424 GVID IAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA AA EIKALIDDSV Sbjct: 363 GVIDSIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSATAAMEIKALIDDSV 422 Query: 425 AKVEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQ 484 AKV+ GS LV +AG T+++VV SV +++ IVA IS AS EQS+GIE++ +A+ Q+DEGTQ Sbjct: 423 AKVDNGSKLVQQAGLTIDEVVTSVGSLSGIVAAISNASQEQSAGIEQVGQAIVQIDEGTQ 482 Query: 485 QNAALVEQSAAAAKAMQEQAADLAKAISIFKLAEAEMKKTSAPA 528 QNAALVEQSAAAA++++EQA L + +SIFKL + ++APA Sbjct: 483 QNAALVEQSAAAAQSLREQADQLMQLVSIFKLDRQSVATSAAPA 526 >gi|152981395|ref|YP_001355274.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 571 Score = 443 bits (1140), Expect = e-125, Method: Compositional matrix adjust. Identities = 279/592 (47%), Positives = 375/592 (63%), Gaps = 38/592 (6%) Query: 7 NLKVAVRLAAVFALIVGLLAVVSITAFVKINNINRSIDQIINDRYLKVRWAFDMRDGINE 66 NLK+ RL+ F +V LL V++ AF +I +N +I ++ DRY K A M+D +N+ Sbjct: 3 NLKIGQRLSLSFGSMVILLVVLATLAFTRIGGLNDAISEVDGDRYPKTVLANVMKDDLNQ 62 Query: 67 QIKYLRGMAIDINNAAGNEKRFGQMEVAVKQTKEALDKIAARQVTAVGQKKIKAVDEARQ 126 + +R A+ + A + Q+ A AL ++ + G++ I + R Sbjct: 63 IARNMRN-ALLMTEKAAIQAELTQIGKATDSLNNALVELEKTVRSERGRQTIAGLQADRS 121 Query: 127 VFDTSRAELMALIRAGKGDAANEYVLRKITDAQNKYLDLARAFADSQSSQLSAEGAKAVE 186 F + + + L AG D A + ++ AQ YL D Q+ + GA+A Sbjct: 122 KFLPLKDDFIKLASAGIKDEAVALLFAEVRPAQLSYLASIDKLIDYQNELMKKSGAEANA 181 Query: 187 DGAMAIEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVAENVASGDLTTRIVPHSKD 246 + + S +AVL + + L RSI +PL++AV +A VA GDLT IV SKD Sbjct: 182 KASQTQLLIGIFSIIAVLIAAVFAVLATRSITRPLSQAVVLARKVADGDLTGSIVVESKD 241 Query: 247 ETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSARTEQQAGSLEETAS 306 ETGQL+QAL+ MN+ L+ IV+ VR GTD+IA+AS +IA+GNLDLS+RTEQQA SLEETAS Sbjct: 242 ETGQLLQALKDMNEGLLKIVTQVRLGTDTIASASHQIATGNLDLSSRTEQQASSLEETAS 301 Query: 307 AMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVSTMEEINQSSRKIVDIIGV 366 +MEE+TSTV+QNA+NARQ+NQ+A SAS++A++GG +V +VV TM EIN S++KIVDIIGV Sbjct: 302 SMEELTSTVKQNAENARQSNQLALSASEVAVRGGAVVSKVVDTMGEINDSAKKIVDIIGV 361 Query: 367 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKALIDDSVAK 426 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQRSA+AAKEIK LI DSV K Sbjct: 362 IDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRTLAQRSASAAKEIKELIGDSVDK 421 Query: 427 VEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINRAVTQMDEGTQQN 486 V GS LV +AG TM +VV SV+ VTDI++EI+AAS EQ+ GIE+IN+AV QMD+ TQQN Sbjct: 422 VSIGSRLVDDAGATMREVVESVKRVTDIMSEITAASQEQTDGIEQINQAVMQMDQVTQQN 481 Query: 487 AALVEQSAAAAKAMQEQAADLAKAISIFKLAEAEMKKTSAPAMVQPQPQPQPIRKPATTM 546 AALVE++AAAA+++Q QA+ L++ + +FKL +V P Sbjct: 482 AALVEEAAAAAESLQGQASHLSQVVGVFKL------DGHGTTVVNAVP------------ 523 Query: 547 PKARTVTAPARPIVSAPATAPALKAP-SRIDD--------------DAWETF 583 T TAP +P V+ A +K +I+D D WE F Sbjct: 524 ----TYTAPEQPKVAGKAALHKVKTTQQKIEDKEFARVPRNVVPAGDEWEQF 571 >gi|152980488|ref|YP_001354515.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 567 Score = 425 bits (1092), Expect = e-120, Method: Compositional matrix adjust. Identities = 285/595 (47%), Positives = 383/595 (64%), Gaps = 50/595 (8%) Query: 7 NLKVAVRLAAVFALIVGLLAVVSITAFVKINNINRS---IDQIINDRYLKVRWAFDMRDG 63 NLK+ +RL FA+I+ L+A + + ++ ++ ++ +++ + L W Sbjct: 5 NLKIGMRLGLAFAVILLLMASMIVVGVWRLQDVAQATVHMEEAAHKERLTHEW------- 57 Query: 64 INEQIKYLRGMAIDI-------NNAAGNEKRF-GQMEVAVKQTKEALDKIAARQVTAVGQ 115 YL +A I +N A +K+F +ME+ ++ + ++I A + G+ Sbjct: 58 ------YLGNVANAIRTAARIRSNDAEIQKQFQKEMELQSQEISKLQNEIVALIHSEEGK 111 Query: 116 KKIKAVDEARQVFDTSRAELMAL---IRAGKGDAANEYVLRKITDAQNKYLDLARAFADS 172 K + V E R + R ++ L A AA + V K+ A Y + +A Sbjct: 112 KLMSVVGEKRTAYMDIRKDVFKLKAEANAAADLAATKLVETKMDPAMAAYNESVQAVVSF 171 Query: 173 QSSQLSAEGAKAVEDGAMA----IEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVA 228 Q Q+ + AKA D A I +TL ++A++ S L +L++RSI +PL AV VA Sbjct: 172 Q--QVIFQRAKADVDALYASGRTILITLG--SIALILSAFLAWLLSRSITRPLDYAVSVA 227 Query: 229 ENVASGDLTTRIVPHSKDETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNL 288 VASGDL +I S DETGQL++ALR MND LV VS VR G ++IATAS +IA+GNL Sbjct: 228 RTVASGDLRNKIQSSSNDETGQLLRALRDMNDGLVQSVSQVRTGIETIATASNQIAAGNL 287 Query: 289 DLSARTEQQAGSLEETASAMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVS 348 DLS+RTE+QA SLEETAS+MEE+TSTV+QNADNARQANQ+A SAS +A +GGE+V RVV Sbjct: 288 DLSSRTEEQASSLEETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGEVVSRVVD 347 Query: 349 TMEEINQSSRKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQR 408 TME+IN S++KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVR+LAQR Sbjct: 348 TMEQINASAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQR 407 Query: 409 SAAAAKEIKALIDDSVAKVEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSG 468 SAAAAKEIK LI DSV KVE GS LV EAG TM++VV SV++VTDI++EI AAS EQS+G Sbjct: 408 SAAAAKEIKTLIGDSVDKVELGSKLVGEAGVTMDEVVQSVKHVTDIMSEIMAASQEQSAG 467 Query: 469 IEEINRAVTQMDEGTQQNAALVEQSAAAAKAMQEQAADLAKAISIFKLAEAEMKKTSAPA 528 IE++N+A+ QMD+ TQQNAALVE++AAAA+++ EQAA LA+A+S+FKL + +AP+ Sbjct: 468 IEQVNQAIGQMDQVTQQNAALVEEAAAAAESLNEQAAKLAEAVSVFKL--DSITAAAAPS 525 Query: 529 MVQPQPQPQPIRKPATTMPKARTVTAPARPIVSAPATAPALKAPSRIDDDAWETF 583 K + + APA ++ P T + DD WE F Sbjct: 526 ------------KKVNVGTRVASHGAPANRAIAVPVTKKISNGAATGGDD-WEEF 567 >gi|152980930|ref|YP_001351773.1| methyl-accepting chemotaxis protein [Janthinobacterium sp. Marseille] Length = 566 Score = 420 bits (1079), Expect = e-118, Method: Compositional matrix adjust. Identities = 267/562 (47%), Positives = 353/562 (62%), Gaps = 24/562 (4%) Query: 4 YFGNLKVAVRLAAVFALIVGL---LAVVSITAFVKINNINRSIDQI-INDRYLKVRWAFD 59 +F N+K+ RL F +++ L +A I ++ I RS+ ++ I + WA Sbjct: 3 FFSNMKIGARLMLGFGVVLALSIAIAADGIRQLHAVSAITRSMLELPIAKERMVSDWAAI 62 Query: 60 MRDGINEQIKYLRGMAIDINNA-AGNEKRFGQMEVAVKQTKEALDKIAARQVTAVGQKKI 118 + I I G+A + A A +F + KQ+ E + K+ T ++ Sbjct: 63 TKASIARTI----GVAKSADPALAQFSAKFAADDS--KQSMEIIQKLEPLLNTDQEKELY 116 Query: 119 KAVDEARQVFDTSRAELMALIRAGKGDAANEYVLRKITDAQNKYLDLARAFADSQSSQLS 178 + + R+ F R +M L GK A +Y A + + + F + + Q+ Sbjct: 117 AKILDVRKSFLAGREGVMKLKTEGKEAEAAKYFDTTFLPAADSFKNHFTEFVELERKQMD 176 Query: 179 AEGAKAVEDGAMAIEVTLACSAVAVLASIILGYLMARSIVKPLTEAVRVAENVASGDLTT 238 A A+ + A + + SA+ + I + + I +PL AV A VA GDLT Sbjct: 177 AGTAQLSDVEAASTRQLMLLSAMVLAFGIFCAWRLTIGITRPLKTAVDAARRVAGGDLTN 236 Query: 239 RIVPHSKDETGQLMQALRKMNDNLVNIVSGVRRGTDSIATASGEIASGNLDLSARTEQQA 298 I SKDE GQL+ AL+ MND L IV VR GT++I TAS EIA+GNLDLS+RTEQQA Sbjct: 237 DIKAESKDECGQLLAALKDMNDGLQRIVGEVRLGTETITTASNEIAAGNLDLSSRTEQQA 296 Query: 299 GSLEETASAMEEMTSTVRQNADNARQANQMAASASQIALQGGEIVGRVVSTMEEINQSSR 358 SLEETAS+MEE+TSTV+QNADNARQANQ+A SAS++AL+GG++V +VV TM IN+SSR Sbjct: 297 SSLEETASSMEELTSTVKQNADNARQANQLAVSASEVALKGGDVVSQVVQTMSSINESSR 356 Query: 359 KIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSAAAAKEIKA 418 KIVDII VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSA+AAKEIKA Sbjct: 357 KIVDIISVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVATEVRSLAQRSASAAKEIKA 416 Query: 419 LIDDSVAKVEGGSHLVAEAGTTMEQVVNSVRNVTDIVAEISAASAEQSSGIEEINRAVTQ 478 LI DSV KV+ G+ LVAEAG TM+++VNS+R VTDI+ EI+AAS EQS+GIE+IN+A+ Q Sbjct: 417 LIGDSVGKVDTGNKLVAEAGATMDEIVNSIRRVTDIMGEITAASQEQSAGIEQINQAIGQ 476 Query: 479 MDEGTQQNAALVEQSAAAAKAMQEQAADLAKAISIFKL---AEAEMKKTSAPAMVQPQP- 534 MD TQQNA+LVE++AAAA++MQ+QA L + + FKL EA + S + P+P Sbjct: 477 MDHVTQQNASLVEEAAAAAESMQDQARKLGQVVGAFKLDNAQEANPPRASGVTRLAPKPA 536 Query: 535 ---------QPQPIRKPATTMP 547 P P R+ +P Sbjct: 537 AGSAGLAVAAPLPQRRANGALP 558 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.313 0.125 0.326 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 955,254 Number of extensions: 32574 Number of successful extensions: 311 Number of sequences better than 1.0e-08: 21 Number of HSP's gapped: 237 Number of HSP's successfully gapped: 21 Length of query: 583 Length of database: 1,221,021 Length adjustment: 88 Effective length of query: 495 Effective length of database: 895,685 Effective search space: 443364075 Effective search space used: 443364075 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 132 (55.5 bits)