BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2480.p (669 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152981266|ref|YP_001355333.1| AsmA protein [Janthinobacterium... 395 e-111 gi|152981940|ref|YP_001353591.1| hypothetical protein mma_1901 [... 79 1e-15 >gi|152981266|ref|YP_001355333.1| AsmA protein [Janthinobacterium sp. Marseille] Length = 667 Score = 395 bits (1015), Expect = e-111, Method: Compositional matrix adjust. Identities = 231/654 (35%), Positives = 359/654 (54%), Gaps = 26/654 (3%) Query: 20 WSIAALAALLAVPILLVALLDWNLLKPWLSRQFSVVLSREIRLDGPISLSWSLAPSSPQG 79 WS +ALL V +L + + DWN KPWL+ + S R ++G + L+W A + Sbjct: 2 WSAIVFSALLLVCVLFLLMFDWNRAKPWLNERVSEATGRHFAINGDLILTWQRAEPATGT 61 Query: 80 GVSWLPQLHLTAQDLQIGNPAWAHSAAHLLRAQRLDLHFSPLPLLRWHWHVTDLRIDGLD 139 W+P L+A D+ +GNP WA +++ + +PLPLL + L++D + Sbjct: 62 WRDWIPAPRLSAHDVTLGNPEWAKPDSNMAEIGHITFSVNPLPLLNKTIVIPSLQLDDPN 121 Query: 140 LVMERVDEHHKNWRFSDQPRSRWSFDIHQIVFDHALIRYVDQPLDLDLRFDVRPLTSDIN 199 L ++RV + NW F S W+ D+ ++ F I D+ +D + ++ D Sbjct: 122 LALQRVSKGKDNWTFKQSDPSEWTLDLQRLYFYRGEITLKDEVEHIDAKANI-----DTL 176 Query: 200 RAAALRDQRDQRDDGALMLQAAVSGRYGQAPVQGQLRGGALPDLLNEGSVYPLQAEGEVG 259 A+ D ++ +SG + A + G + GAL L N +PL+A VG Sbjct: 177 EPTAVND---------FVMGWKISGTFNGARISGDGKAGALLALKNVDKPFPLEARLNVG 227 Query: 260 AVHTVIHGNLIEPHHLQRADLRIRLSGDSLDRLYAATGVPLPSTQPFSTSGQLTITRVDA 319 ++G + +P L D+R+ LSG S+ LY TG+ LP T FST G L A Sbjct: 228 KTSIRVNGTVTKPQELAAIDMRLHLSGASMADLYPLTGITLPKTPEFSTEGHLIGVTNKA 287 Query: 320 ETRAWNWRYEHFSGKVGDSDFAGDATYYRGPPKNHLTVQAEAALLRLSDYLPAAGT---- 375 + W YE F GKVGDSD AG Y P+ L+ + LL+LSD P G Sbjct: 288 GGK---WTYEKFKGKVGDSDIAGTLVYEAKQPRPLLSGTVVSNLLQLSDLGPVIGADSNE 344 Query: 376 --KEAGGSSK---SRVLPEKPAQPQRWAKLNADISLQAKRVQLRPDLEWQDASVTLRLQD 430 KE G ++ +VLP + +RW ++AD+ + ++ L ++ L+LQD Sbjct: 345 SKKERGVAANQPADKVLPVEKFTTERWGSIDADVQITGHKIVHSASLPIENLDTHLKLQD 404 Query: 431 QVLTAAPLRFSMAGGKGEGELSLDGRQSEIGSHLQVRLHELQVRQLFPRLAKLDASFGKL 490 V+T +PL+F +AGG G++ LDGR + I + +V L+++QLFP + ASFG++ Sbjct: 405 SVVTLSPLKFGVAGGNLIGDIKLDGRNNVIKAEAKVSARHLKLKQLFPTFQPMQASFGEV 464 Query: 491 DGQATLTGQGNSVTAMLASAHGEIQADLSQGTISQFILEAAGLNLANAVFAKFYRDQQVK 550 +G +L+G GNS+ ++LA+++GEI++ +++GTIS+ +LE GLN+ N V +K + D+QVK Sbjct: 465 NGDTSLSGTGNSIASLLATSNGEIKSLINEGTISKLLLEQIGLNIGNIVISKLFGDKQVK 524 Query: 551 LLCGAADVRIQNGLAQVRRGILNTEDAAIDISGEVDLGKQSLALNVYPRTKQMRILSLRT 610 L C A D+ + NGL Q R I++T+DA + I+G VDL K+ L L + P TK +RI+SLR Sbjct: 525 LNCMATDLSVTNGLVQTRTFIVDTDDAVMYITGTVDLAKEQLNLTIKPETKGLRIVSLRA 584 Query: 611 PLYVRGSFAKPDIGASKSGLAARTGAAAALALVAPMAAVIPLVTPGQAIPDDCT 664 P+YV G FA P +G LA + G+A ALA+VAP+ A++PL+ G + CT Sbjct: 585 PIYVTGEFANPKVGVDTGVLALKAGSAVALAVVAPVTALLPLINVGNPEENKCT 638 >gi|152981940|ref|YP_001353591.1| hypothetical protein mma_1901 [Janthinobacterium sp. Marseille] Length = 639 Score = 78.6 bits (192), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 144/608 (23%), Positives = 253/608 (41%), Gaps = 61/608 (10%) Query: 79 GGVSW--LPQLHLTAQDLQIGNPAWAHSAAHLLRAQRLDLHFSPLPLLRWHWHVTDLRID 136 GG+S LP L A+D++I NP WA +LL+A + S LPLLR + V L + Sbjct: 54 GGLSLDLLPYPRLRARDVRISNPDWAQDK-YLLQADDIRARLSLLPLLRGNVAVEGLLVK 112 Query: 137 GLDLVMERVDEHHKNWRFSDQPRSRWS-FDIHQIVFDHALIRYVDQPLDLDLRFDVRPLT 195 GL L +E D+ ++W R S FD+ + D + I Y P + + V L Sbjct: 113 GLQLNLEEADDGRRSWEMPATRSLRTSQFDLQALRADGSTINY-RTPGNEIKSWQVESLQ 171 Query: 196 SDINRAAALRDQRDQRDDGALMLQAAVSGRYGQAPVQGQLRGGALPDLLNEGSVYPLQAE 255 + R D L AVSGR + Q G L DL G+ + + ++ Sbjct: 172 A--------------RGDSGLR-NMAVSGRVLRDKYALQFD-GKLDDLSALGTPHAV-SQ 214 Query: 256 GEV----GAVHTVIHGNLIEPHHLQRADLRIRLSGDSLDRLYAATGVPLPSTQPFSTSGQ 311 G + G + G L LQ D + + S+ LY + S P + Sbjct: 215 GTLTLKSGEAQASVTGLLPLDSVLQDYDFALVVDAASMKELYGFLQIDRAS--PAALKAS 272 Query: 312 LTITRVDAETRAWNWRYEHFSGKVGDSDFAGDATYYRGPPKNHLTVQAEAALLRLSDYLP 371 +T+ + ++ ++ ++G + +GD + R + + + +A + + Sbjct: 273 VTLQAKNNQS-----LFKDLQLQLGKLNLSGDGKWARKNDRLNFDARLQADYIDMVQTFL 327 Query: 372 AAGTKEAGGSSKSRVLPEKP-AQPQRWAKLNADISLQAK--RVQLRPDLEWQDASVTLRL 428 G + + +KP A P A D L A ++LR +E +A T+ Sbjct: 328 DLGQAPLSPKKEGELFRDKPLAWPLLLAMDGVDGKLDATIATLKLRSGVEVANAKGTMSF 387 Query: 429 QDQVLTAAPLRFSMAGGKGEGELSLDGRQSEIGSHLQVRLHELQVRQLFPRLA-KLDASF 487 D L S+ GG G++ L+G++ + L ++L+E+ + F K+ + Sbjct: 388 TDDKLNVQHFSGSLLGGSASGDIVLEGKKQAV--QLNLQLNEVSLGGWFKASGKKVVING 445 Query: 488 GKLDGQATLTGQGNSVTAMLASAHGEIQADLSQGTISQFILEAAGLNLANAVFAKFYRDQ 547 G + A + G S+ + A +G + D+ G+ +Q + AG A + + Sbjct: 446 GPMKVDARVHASGASMNDLAAGLNGPV--DIRIGS-AQILSPGAG--KAEFWLTGLFSSK 500 Query: 548 ---QVKLLCGAADVRIQNGLAQVRRGILN--TEDAAIDISGEVDLGKQSLALNVYPRTKQ 602 ++ L C + + Q+G+A+ GI+ ++ + + SGEV+L +QS+ L + + Sbjct: 501 DSTRIDLACASGHLPFQSGVAK-GAGIVGARSDVSQLLTSGEVNLRQQSVDLRGSVKVRS 559 Query: 603 MRILSLRT---PLYVRGSFAKPDIGASKS---GLAARTGAAAALALVAPMAAVI-----P 651 L L + + G KP + +S G AR GAA + V+ +A I P Sbjct: 560 GVSLGLSNFSDGVKIAGPIVKPQLNMDESGTLGTIARIGAAILTSGVSIVATSIWDGANP 619 Query: 652 LVTPGQAI 659 P Q + Sbjct: 620 KSDPCQVV 627 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.320 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,524,583 Number of extensions: 62580 Number of successful extensions: 193 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 189 Number of HSP's successfully gapped: 2 Length of query: 669 Length of database: 1,221,021 Length adjustment: 90 Effective length of query: 579 Effective length of database: 888,291 Effective search space: 514320489 Effective search space used: 514320489 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)