BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2472.p
         (105 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983003|ref|YP_001354750.1| ArsR family transcriptional reg...   114   9e-28
gi|152982537|ref|YP_001352147.1| ArsR family transcriptional reg...    99   5e-23

>gi|152983003|ref|YP_001354750.1| ArsR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 128

 Score =  114 bits (286), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 71/95 (74%)

Query: 11  QMRHAAGQAVAALKLLANEDRLLLMCQLSQQEMCVSELEQTLDIRQPTLSQQLGVLRTEG 70
           +++ AAGQA   LK LAN DRLLL+CQ++Q E  V ELE    IRQPTLSQQL VLR E 
Sbjct: 32  KLQAAAGQACGLLKTLANPDRLLLLCQMTQGEYSVGELETMTGIRQPTLSQQLTVLREEK 91

Query: 71  VVSTRREGKRVYYRVADPRLLEMLGLMYHLYCPKE 105
           VV+TRREGK+++Y V+ P  L +L ++Y LYCPK+
Sbjct: 92  VVNTRREGKQIFYSVSSPEALAILQVLYQLYCPKD 126


>gi|152982537|ref|YP_001352147.1| ArsR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 120

 Score = 99.0 bits (245), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 47/94 (50%), Positives = 67/94 (71%)

Query: 10  DQMRHAAGQAVAALKLLANEDRLLLMCQLSQQEMCVSELEQTLDIRQPTLSQQLGVLRTE 69
           + +++AA +A   LK L+N DRLLL+CQL + E CVSELE   +IRQPTLSQQL VLR E
Sbjct: 21  EALQNAAAKACGLLKTLSNRDRLLLLCQLCEGEYCVSELEAMTEIRQPTLSQQLTVLREE 80

Query: 70  GVVSTRREGKRVYYRVADPRLLEMLGLMYHLYCP 103
            +V TRR+GK++YY +A    + ++ ++Y  +C 
Sbjct: 81  QLVHTRRDGKQIYYSMASKEAMAVIAVLYQQFCA 114


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.323    0.135    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 208,468
Number of extensions: 6238
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 105
Length of database: 1,221,021
Length adjustment: 70
Effective length of query: 35
Effective length of database: 962,231
Effective search space: 33678085
Effective search space used: 33678085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 122 (51.6 bits)