BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2471.p (297 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982244|ref|YP_001354284.1| LysR family transcriptional reg... 133 1e-32 gi|152981587|ref|YP_001352513.1| LysR family transcriptional reg... 69 4e-13 gi|152981653|ref|YP_001353379.1| LysR family transcriptional reg... 68 8e-13 gi|152981632|ref|YP_001352505.1| cys regulon transcriptional act... 67 2e-12 gi|152981664|ref|YP_001352876.1| LysR family transcriptional reg... 63 2e-11 >gi|152982244|ref|YP_001354284.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 299 Score = 133 bits (335), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/277 (30%), Positives = 130/277 (46%), Gaps = 2/277 (0%) Query: 3 LEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFLREGRRLTL 62 + +N+ HL YFW VAK G + RA+E LH + +S QI Q E L LF R GRRL L Sbjct: 1 MSGINYKHLHYFWVVAKSGGIGRASERLHLTPQTISGQISQFEDVLGYKLFNRVGRRLEL 60 Query: 63 TDTGQLVFTYADNIFGLSQEMLGRLEGRSAG-VTRLRVGSVATLSRNYQENWIRPMLSDP 121 D G++V YAD IF L +E+ L R G + RVG + + + P + P Sbjct: 61 NDAGRVVLGYADEIFTLGEELQEVLRFRPGGWPLQFRVGVADAVPKAIAYLLLEPAMELP 120 Query: 122 -SVSLTLESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGPAHRW 180 S+ + G L LL L H+LD+V+A+ +P++ D + LG ++ Sbjct: 121 ESLRIVCREGKLTNLLADLAVHRLDIVIADSPMPANIDVRGYNHLLGECGMTFFATDALA 180 Query: 181 EARSLRIPQDLEGLDMALPGPRHALRMQFDALCISNDVRPRMRAEVDDMAMLRLIARDSG 240 + P+ L+ +PG A+R + VRPR+ E DD A+L+ Sbjct: 181 KTYQKDFPKSLDAAPFLMPGEDAAVRPRLIRWFEKEKVRPRIVGEFDDGALLQAFGEAGK 240 Query: 241 WLTVLPEVVVQDELRNGTLVAAGQASELVESFYAITT 277 + P V + + + G+ + + E FYAI+ Sbjct: 241 GIFAAPSAVAEQIKKQYGVTEIGRTNAVSEQFYAISV 277 >gi|152981587|ref|YP_001352513.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 289 Score = 68.9 bits (167), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 71/256 (27%), Positives = 114/256 (44%), Gaps = 26/256 (10%) Query: 10 HLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFLREGRRLTLTDTGQLV 69 HLRYF A+ TRA+E LH +Q +S QI+Q+E +L LF R GR + LT G+L Sbjct: 5 HLRYFLAAAQSQSFTRASESLHITQPTLSHQIKQIEDELGIQLFDRVGRVVKLTTAGELF 64 Query: 70 FTYADNIF-----GLSQEMLGRLEGRSAGVTRLRVGSVATLSRNYQENWIRPMLSD---- 120 YA GL + L LE G R+ G +++ + + P+L+D Sbjct: 65 QVYAKRALLEVDAGL--DALNELENLKHG--RVTFGVLSSFGTFH----LPPILADFNKV 116 Query: 121 -PSVSLT---LESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGP 176 P + +T L SG +E ERL+ L +A PS ++ VVG Sbjct: 117 YPGIKITVLRLRSGEIE---ERLLDGDLHFGVA--YAPSSTEQINVEPLFTVPLALVVGD 171 Query: 177 AHRWEARSLRIPQDLEGLDMALPGPRHALRMQFDALCISNDVRPRMRAEVDDMAMLRLIA 236 H + +L ++ + + R DA+ ++N + PR+ E++ + + Sbjct: 172 HHPLVGSAGITLNELNEHELVMLSDEYNSRKMMDAILLANGITPRIVMEMNAIEPILATV 231 Query: 237 RDSGWLTVLPEVVVQD 252 R S T+L +V + Sbjct: 232 RHSSLATILSANLVDE 247 >gi|152981653|ref|YP_001353379.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 285 Score = 67.8 bits (164), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 48/152 (31%), Positives = 76/152 (50%), Gaps = 10/152 (6%) Query: 11 LRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFLREGRRLTLTDTGQLVF 70 LR F V G TRAA+ +H +QS VS QIR+LE+Q + DL R GR + T G+ + Sbjct: 7 LRSFVAVVDTGSFTRAADSVHLTQSTVSQQIRRLEEQFDCDLLNRSGRYVATTPEGESLL 66 Query: 71 TYADNIFGLSQEMLGRLEGRSAGVTRLRVGSVATLSRNYQENWIRPMLSD-----PSVSL 125 YA I L E + ++ +S +++G + ++ + + P+L+ P + L Sbjct: 67 GYARRILQLMDEAVEQVT-QSVEQGEIQLG----VPEDFAAHALTPVLAAFAGNYPGIRL 121 Query: 126 TLESGLLEGLLERLMQHQLDVVLANETVPSDP 157 + SGL L Q +LD+ L + S P Sbjct: 122 EITSGLSHDLYRMFQQGKLDLALVKQRKDSAP 153 >gi|152981632|ref|YP_001352505.1| cys regulon transcriptional activator [Janthinobacterium sp. Marseille] Length = 308 Score = 66.6 bits (161), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 26/191 (13%) Query: 6 LNFHHLRYFWRVAKLGH-LTRAAEELHTSQSAVSAQIRQLEKQLEEDLFLREGRRLT-LT 63 +NF LR A+ G+ LT A L TSQ VS QIR+LE++L D+F R G+RLT LT Sbjct: 1 MNFQQLRSIRETARCGYNLTEVANVLFTSQPGVSRQIRELEEELGVDIFERNGKRLTGLT 60 Query: 64 DTGQLVFTYADNIFGLSQEMLGRLEGRSAGVTRLRVGSVATLSRNYQENWIRPMLSD--- 120 D G+ + D + L E L R AG +G++A + + Q ++ P + Sbjct: 61 DPGRGILQIIDRLL-LEAENLQRASQEYAG---QEIGTLAVATTHTQARYMLPKVVQVFR 116 Query: 121 ---PSVSLTLESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVSVVGPA 177 P V + L+ E + E ++ + D+ +A E + D V P Sbjct: 117 KEFPKVRIALQQSTPEHIAEWVLSGKADIGIATEGLSQFEDL-------------VSFPC 163 Query: 178 HRWEARSLRIP 188 +RW S+ +P Sbjct: 164 YRWH-HSVVVP 173 >gi|152981664|ref|YP_001352876.1| LysR family transcriptional regulator [Janthinobacterium sp. Marseille] Length = 301 Score = 63.2 bits (152), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 27/282 (9%) Query: 3 LEQLNFHHLRYFWRVAKLGHLTRAAEELHTSQSAVSAQIRQLEKQLEEDLFLREGRRLTL 62 + ++ LRYF VA+ GHLT+AA+ + Q +S QIR LEK+L LF R R + L Sbjct: 1 MSSIDLRLLRYFVIVAEEGHLTKAAQRIGIQQPPLSQQIRALEKELGVTLFRRMPRGMEL 60 Query: 63 TDTGQLVFTYADNIFGLSQEMLGRLEGRSAGVTRLRVGSVATLSRNYQEN-WIRPML--- 118 T++GQ + A I L ++ GV R+ +G L+ + E+ + P + Sbjct: 61 TESGQALLIDARLI-------LEQVNTTIEGVRRISLGESGRLAVGFTESAALHPFIPAV 113 Query: 119 ------SDPSVSLTLESGLLEGLLERLMQHQLDVVLANETVPSDPDRPLHCRFLGSQAVS 172 P V + +E L+E L ++LDV + S + L + + Sbjct: 114 IRAFRQKSPGVIMAVEESNTNELVEDLRHNRLDVAFIRSPIGSAAGLKMET-MLVEEMIV 172 Query: 173 VVGPAHRWEARSLRIP-----QDLEGLDMALPGPRHALRMQFDALCISNDVRPRMRAEV- 226 + HR R +P +D L+ GP L A C + PR+ E Sbjct: 173 ALPITHRLAQRRKSLPLTALAEDDFILNRRPSGP--GLYDSVIAACRAAGFSPRVVQEAK 230 Query: 227 DDMAMLRLIARDSGWLTVLPEVVVQDELRNGTLVAAGQASEL 268 +++ L L+A G ++++P + +L+ + QA +L Sbjct: 231 KNLSTLSLVAAGLG-VSIVPASMRHVQLKEVVYLKLEQAPDL 271 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.135 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 647,926 Number of extensions: 24143 Number of successful extensions: 130 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 125 Number of HSP's successfully gapped: 12 Length of query: 297 Length of database: 1,221,021 Length adjustment: 83 Effective length of query: 214 Effective length of database: 914,170 Effective search space: 195632380 Effective search space used: 195632380 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)