BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2467.p
         (264 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983124|ref|YP_001354747.1| hypothetical protein mma_3057 [...   274   4e-75

>gi|152983124|ref|YP_001354747.1| hypothetical protein mma_3057
           [Janthinobacterium sp. Marseille]
          Length = 265

 Score =  274 bits (701), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 154/263 (58%), Positives = 207/263 (78%), Gaps = 4/263 (1%)

Query: 4   SLLLGALVGCIMGLTGAGGGILAIPLLVFGQHLSVPQAGPIGLLAVGIASAMGALIGLRA 63
           SL+LGA VG +MGLTGAGGGILA+PLLVF  +++V  AGPI LL+VGI++A+GA+IG RA
Sbjct: 4   SLVLGATVGLVMGLTGAGGGILAVPLLVFALNMTVSDAGPIALLSVGISAAVGAMIGFRA 63

Query: 64  GIVRYRAALLIAAIGIVLTPAGTWLAHQLDTRYLTLLFAVVMLWVAFKGLRDARRSKTVA 123
           G VRYRAA++IA  GI+  P G WLA +LDT  L++LFAVV++W+A+K L D R+    A
Sbjct: 64  GAVRYRAAMVIAGTGILAAPIGLWLAQRLDTNLLSILFAVVLIWIAYKNLMDGRQKTQKA 123

Query: 124 ATVNADC-PCLRDQ-SGRFVWTPRCASRLVVMGGVAGVLSGLLGVGGGFVIVPALQRFSD 181
             VN D  PC+RD+ SGRFVWT +CASRL++ G  AG+LSGLLGVGGGFV+VPALQR++D
Sbjct: 124 --VNGDSLPCIRDEKSGRFVWTSKCASRLLLAGSFAGILSGLLGVGGGFVMVPALQRYTD 181

Query: 182 LAMQSVVSTSLAVIALISLVSVATSMVSGHFDLAIGLPFSAGAVIGMLFGGKLAVRWHPA 241
           LAM+SVV+TSLAVIA ISL  V  S+ +GHFD  +G+PF+AG+ +GML G  L++R    
Sbjct: 182 LAMKSVVATSLAVIAFISLTGVVVSISAGHFDQGVGVPFAAGSALGMLIGQPLSLRLPAK 241

Query: 242 HLKLAFSVVCMAVSLGLIVKSVH 264
           +LK+AF+++C+ V+  ++ K++ 
Sbjct: 242 YLKIAFAIICILVACLMVGKTIS 264


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.329    0.142    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 474,310
Number of extensions: 16605
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 97
Number of HSP's successfully gapped: 1
Length of query: 264
Length of database: 1,221,021
Length adjustment: 82
Effective length of query: 182
Effective length of database: 917,867
Effective search space: 167051794
Effective search space used: 167051794
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 128 (53.9 bits)