BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2463.p (472 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptio... 238 5e-64 gi|152979868|ref|YP_001354671.1| two-components system response ... 233 1e-62 gi|152982294|ref|YP_001354298.1| transcriptional regulator [Jant... 203 2e-53 gi|152981133|ref|YP_001355363.1| sigma-54 dependent response reg... 202 3e-53 gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(... 192 3e-50 >gi|152982902|ref|YP_001352591.1| sigma-54-dependent transcriptional activator [Janthinobacterium sp. Marseille] Length = 550 Score = 238 bits (607), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 139/313 (44%), Positives = 189/313 (60%), Gaps = 25/313 (7%) Query: 169 GLVGKSAAFNRALGELQRVAASELPVLLLGESGTGKELFARALHEASAHARGPFVVLDCS 228 GL+ +S + Q+VA VL+ GESG GKE+ R +H+ SAH GPFV ++C Sbjct: 247 GLITRSPGMQQITALAQKVAKVSATVLISGESGVGKEVLTRLIHKESAHHAGPFVKINCG 306 Query: 229 GLTETLFESELFGYEKGAFTGAHVR-KAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIE 287 + L ESELFGYE GAFTGA + K G++E A GTLFLDEIG++PL +QVKLL++++ Sbjct: 307 AIPRDLLESELFGYEAGAFTGAQRQGKVGMIEVADKGTLFLDEIGELPLDLQVKLLQVLQ 366 Query: 288 SGTYRRVGAVDTQQADFRLVAATHKPLQKMVANAQFRQDLYYRISAFPIHLPALRERRDD 347 T R+G Q D R+VAAT++ LQ MV QFR DL+YR++ P+H+P LRERR+D Sbjct: 367 DRTLTRLGGTRPIQVDVRVVAATNRDLQAMVDARQFRSDLFYRLNVVPLHVPPLRERRED 426 Query: 348 IALLVQSLLQRGNGAPQQRLQVSPQAMASLLNYDWPGNIRELRNVLERARLFADDGVIKP 407 I L+Q L N ++S QA+A+LL+YDWPGN+RELRN++ER + A + +I+ Sbjct: 427 ILPLIQHYLDELNAQYDLDKRLSEQALAALLDYDWPGNVRELRNMVERLVVTAPESLIRS 486 Query: 408 EHLALEPPLAIPVRSLQAGRSSHRSDLADLADIVRQFHGTRKEL-------------ARS 454 + L P L +RS S SDLA L R H RK + A+ Sbjct: 487 DSL---PTL---LRS-----SELESDLARLDIKARSAHFERKIVKEAVERYGNTRAAAKH 535 Query: 455 LGWSERTLYRRLK 467 L S+ T+ RRLK Sbjct: 536 LQVSQSTVVRRLK 548 >gi|152979868|ref|YP_001354671.1| two-components system response regulator [Janthinobacterium sp. Marseille] Length = 471 Score = 233 bits (595), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 121/244 (49%), Positives = 162/244 (66%), Gaps = 3/244 (1%) Query: 170 LVGKSAAFNRALGELQRVAASELPVLLLGESGTGKELFARALHEASAHARGPFVVLDCSG 229 L+G+S A ++ R+A S PV + GESG+GKEL AR +H SA + PFV ++C Sbjct: 140 LMGQSEAMLALRAQIARLARSMAPVAISGESGSGKELAARDIHAQSARSDKPFVAVNCGA 199 Query: 230 LTETLFESELFGYEKGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESG 289 + E L E+E FGY KGAFTGA + G + A GGTL LDE+ D+PL MQVKLLR I+ Sbjct: 200 IPEALMEAEFFGYRKGAFTGAVDDRDGFFQAANGGTLLLDEVADLPLAMQVKLLRAIQER 259 Query: 290 TYRRVGAVDTQQADFRLVAATHKPLQKMVANAQFRQDLYYRISAFPIHLPALRERRDDIA 349 R+VGA + D R+++ATH+ L V FRQDLYYR++ ++LP LRER DDIA Sbjct: 260 RVRKVGATTEEPVDVRIISATHQNLHDCVGRGTFRQDLYYRLNVIELNLPPLRERLDDIA 319 Query: 350 LLVQSLLQRGNGAPQQRLQVSPQAMASLLNYDWPGNIRELRNVLERARLFADDGVIKPEH 409 LL +++L R + A Q RL +P A+ +LL Y +PGN+REL N+LERA FA+DGVI+ Sbjct: 320 LLAKAILTRLD-AGQARL--TPAALEALLQYSFPGNVRELENILERALAFANDGVIEVSD 376 Query: 410 LALE 413 L L+ Sbjct: 377 LVLK 380 >gi|152982294|ref|YP_001354298.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 371 Score = 203 bits (517), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 127/310 (40%), Positives = 180/310 (58%), Gaps = 20/310 (6%) Query: 170 LVGKSAAFNRALGELQRVAASELPVLLLGESGTGKELFARALHEASAHARGPFVVLDCSG 229 L G SA + + +VA + VL+ GESGTGKEL A+A+H+ S PFV L+CS Sbjct: 45 LYGASAPMQQLFQMIGKVAPTTANVLIAGESGTGKELVAQAIHQLSREQDKPFVALNCSA 104 Query: 230 LTETLFESELFGYEKGAFTGAHVRKAGLVETAKGGTLFLDEIGDVPLGMQVKLLRLIESG 289 ++ L E+ELFG+E+G+FTGA + G E A GGTLFLDE+ ++ L MQVKLLR++E+ Sbjct: 105 VSPQLIEAELFGHERGSFTGAIRMQKGCFERADGGTLFLDEVTEMSLDMQVKLLRVLETS 164 Query: 290 TYRRVGAVDTQQADFRLVAATHKPLQKMVANAQFRQDLYYRISAFPIHLPALRERRDDIA 349 + R+GA + + R+VAAT++ + + + R DL+YR++ FP+ LP LRER +DI Sbjct: 165 RFCRIGAEEETEVKVRVVAATNRDPVEAMKSGILRSDLFYRLAVFPLDLPPLRERGEDIR 224 Query: 350 LLVQSLLQRGNGAPQQRLQVSPQAMASLLN-YDWPGNIRELRNVLERARLFADDGVIKPE 408 LL L + N R +V +A LLN Y+WPGN+REL+NV+ RA + AD + Sbjct: 225 LLAGLFLDQLN-EEDGRNRVFSKASWRLLNEYNWPGNVRELKNVVHRAYIMAD------Q 277 Query: 409 HLALEPPLAIPVRSL---QAGRSSHRSDLADLADIVRQF--------HGTRKELARSLGW 457 L L P + P RS+ Q G + LAD ++ G + A LG Sbjct: 278 ELELLPAVN-PNRSMVSDQIGDCVTVQLGSKLADAEQRLIYATLGHCGGNKTLTAEVLGV 336 Query: 458 SERTLYRRLK 467 S +TLY RL Sbjct: 337 SLKTLYNRLN 346 >gi|152981133|ref|YP_001355363.1| sigma-54 dependent response regulator [Janthinobacterium sp. Marseille] Length = 481 Score = 202 bits (515), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 125/326 (38%), Positives = 184/326 (56%), Gaps = 17/326 (5%) Query: 151 FVERLQTVRHASVQASRQGLVGKSAAFNRALGELQRVAASELPVLLLGESGTGKELFARA 210 F+ R + H + A +GLVG SAA ++R+A VL+ GESGTGKE+ ARA Sbjct: 168 FILRRELDSHIDL-AGVEGLVGASAALEPIREAIKRLATVPSTVLITGESGTGKEIAARA 226 Query: 211 LHEASAHARGPFVVLDCSGLTETLFESELFGYEKGAFTGAHVRKAGLVETAKGGTLFLDE 270 +H+ S + FV ++C + + ESELFG+ KGAF+GA + GL A+GGTLFLDE Sbjct: 227 MHKLSNRSHNHFVPINCGAVAPDIIESELFGHIKGAFSGAASSREGLFFYAQGGTLFLDE 286 Query: 271 IGDVPLGMQVKLLRLIESGTYRRVGAVDTQQADFRLVAATHKPLQKMVANAQFRQDLYYR 330 + ++PL MQVKLLR++E R VGA D R++AAT++ +++ V +FRQDLYYR Sbjct: 287 VAELPLAMQVKLLRVLEEKRIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRFRQDLYYR 346 Query: 331 ISAFPIHLPALRERRDDIALLVQSL---LQRGNGAPQQRLQVSPQA--MASLLNYDWPGN 385 ++ +H+P LRER +DI L + L + G P ++ P + ASL Y WPGN Sbjct: 347 LNVVQLHMPPLRERTEDIPALAEYFVRQLAQQLGVPAKK----PDSALFASLAGYSWPGN 402 Query: 386 IRELRNVLERARLFADDGVIKPEHLALEPPLAIPVRSLQAGRSSHRSDLADLADIVRQFH 445 +RELRN++ER + + + + V +L+A H + I+ + Sbjct: 403 VRELRNLIERWLILGNISDVTAANNTGSTTTNGDV-TLEAVEKQH------ILKILAEVG 455 Query: 446 GTRKELARSLGWSERTLYRRLKAVGL 471 G + E R LG S +TL R+ G+ Sbjct: 456 GNKTEAGRRLGISRKTLERKCAEWGV 481 >gi|152980688|ref|YP_001352771.1| nitrogen regulation protein NR(I) [Janthinobacterium sp. Marseille] Length = 506 Score = 192 bits (489), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 109/273 (39%), Positives = 167/273 (61%), Gaps = 10/273 (3%) Query: 149 VGFVERL--QTVRHASVQ---ASRQGLVGKSAAFNRALGELQRVAASELPVLLLGESGTG 203 VG + R +++R SV+ A ++G++ A + R++ S + VL+ GESG+G Sbjct: 110 VGLIRRALEESLRETSVEQVSAETPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSG 169 Query: 204 KELFARALHEASAHARGPFVVLDCSGLTETLFESELFGYEKGAFTGAHVRKAGLVETAKG 263 KEL ARALH+ S A PF+ L+ + + + L ESELFG+E+GAFTGA + G E A+ Sbjct: 170 KELVARALHKHSPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQATRRGRFEQAEN 229 Query: 264 GTLFLDEIGDVPLGMQVKLLRLIESGTYRRVGAVDTQQADFRLVAATHKPLQKMVANAQF 323 GTLFLDEIGD+P +Q +LLR++ G + RVG +A+ R++AATH+ L+ V F Sbjct: 230 GTLFLDEIGDMPFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEHRVREGLF 289 Query: 324 RQDLYYRISAFPIHLPALRERRDDIALLVQSLLQRGNGAPQQRLQV---SPQAMASLLNY 380 R+DLY+R++ + LP+LRERR+DI +L + LQ+ A Q ++V S AM L + Sbjct: 290 REDLYHRLNVIRLRLPSLRERREDIPILTRHFLQQ--SAKQLGVEVKRMSDSAMQFLSSL 347 Query: 381 DWPGNIRELRNVLERARLFADDGVIKPEHLALE 413 + PGN+R+L N+ + A ++ + L E Sbjct: 348 ELPGNVRQLENLCNWITVMAPGQTVEAKDLPHE 380 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.321 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 1,050,931 Number of extensions: 43676 Number of successful extensions: 163 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 153 Number of HSP's successfully gapped: 7 Length of query: 472 Length of database: 1,221,021 Length adjustment: 87 Effective length of query: 385 Effective length of database: 899,382 Effective search space: 346262070 Effective search space used: 346262070 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)