BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2461.p
         (309 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152983103|ref|YP_001353457.1| cobalt-zinc-cadmium resistance ...    64   1e-11

>gi|152983103|ref|YP_001353457.1| cobalt-zinc-cadmium resistance
           protein CzcD [Janthinobacterium sp. Marseille]
          Length = 316

 Score = 63.9 bits (154), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 58/214 (27%), Positives = 110/214 (51%), Gaps = 13/214 (6%)

Query: 42  QIMAGVFSKSQGLIADGIHSLSDLVADFVVLLANHHSKKDADEEHPYGHHRFETAASLVL 101
           +++ G+ + S  L++D  H L+D  A  + L+A   +K+ AD    +G+HRFE  A+   
Sbjct: 32  EVIGGLVTGSLALLSDAAHMLTDASALAIALIAIQIAKRAADSRRTFGYHRFEILAASFN 91

Query: 102 GMLLLTVGLGMLWSAIVKLDNPKSVQEVHVLALWVAGGALLAKELLFRYMLSVAKRVKSS 161
            ++L  V + +L+ A  +  +P  +Q + +L +   G   L   L+   +LS  K   +S
Sbjct: 92  AIMLFFVAMYILYEAYRRFKSPIEIQSMGMLIIASLG---LIINLISMKLLSSGK--DAS 146

Query: 162 MLVANAW-HARSDAASSLVVGIGIAGNL----AGYPILDPIAALIVGVMVVKMGWEFAWE 216
           + +  A+    SD   S  VG+ IAG L     G+  +D + A+ +G  V+   W    E
Sbjct: 147 LNIKGAYLEVWSDMLGS--VGV-IAGALIIRFTGWTWVDSVIAVGIGFWVLPRTWILLRE 203

Query: 217 ALHDLMDRAVDQDELEAICRTLLETPGVNGIHDV 250
           +++ L++   +  +LE + +++ +  GV  IHD+
Sbjct: 204 SINVLLEGVPEHIDLEKLRKSVSDIAGVRSIHDL 237


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.322    0.135    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 638,079
Number of extensions: 23336
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 1,221,021
Length adjustment: 83
Effective length of query: 226
Effective length of database: 914,170
Effective search space: 206602420
Effective search space used: 206602420
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)