BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2459.p (390 letters) Database: BlastDatabases/707/707 3697 sequences; 1,221,021 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid trans... 187 1e-48 gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport... 162 4e-41 gi|152982345|ref|YP_001352956.1| ABC-type transport system, invo... 153 2e-38 gi|152980250|ref|YP_001352755.1| macrolide ABC efllux protein [J... 150 1e-37 gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-bi... 149 3e-37 >gi|152982233|ref|YP_001351723.1| ABC-type polar amino acid transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 243 Score = 187 bits (475), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 99/232 (42%), Positives = 152/232 (65%), Gaps = 7/232 (3%) Query: 42 VALRGVGKTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGR 101 +A+ V K+Y S+ Q L+ I +++ PG + IIG+SG+GKS+LLR IN LE+ G Sbjct: 4 IAIDNVKKSYGSN----QVLKGIRMDVEPGEVIAIIGKSGSGKSTLLRCINGLESIDEGS 59 Query: 102 VEVDGVDLATLNEGQLVDLRRRIGMIFQHFNLLSAKTVFDNVAL-PLRVAGVPRLQVESR 160 + V G L +E +L +LR ++GMIFQ FNL +V N+ + P+ V GV + Sbjct: 60 ISVAGSHLGK-SELELRNLRLKVGMIFQQFNLFPHLSVGRNIMISPMIVKGVSEKDARAL 118 Query: 161 VRELLALVGLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAIL 220 + L VGL++K D++P +LSGGQ+QRV IARAL+ P+ LLCDE TSALDPE + +L Sbjct: 119 AMKNLEKVGLSEKFDSFPDQLSGGQQQRVAIARALSMEPQALLCDEVTSALDPELVNEVL 178 Query: 221 QLLREINRKLGITIILITHEMSVIREIADQVLVLEQGRIAELGQVWEVFGHP 272 ++R + + G+T+I++THEM RE+ D+V+ + QG++ E+G ++F +P Sbjct: 179 NVVRGLAHE-GMTLIMVTHEMRFAREVCDRVVFMHQGKVHEIGAPEDIFANP 229 >gi|152981172|ref|YP_001353094.1| ABC-type oligopeptide transport system, ATPase component [Janthinobacterium sp. Marseille] Length = 353 Score = 162 bits (409), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 95/250 (38%), Positives = 142/250 (56%), Gaps = 6/250 (2%) Query: 58 VQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGRVEVDGVDLATLNEGQL 117 V A+ + +A G GI+G SG GKS+ R I RL TP SG + DG +A + Sbjct: 44 VHAVDGVSFSVAKGKTLGIVGESGCGKSTTARLIARLVTPDSGSMIFDGEGVAEFGGIEF 103 Query: 118 VDLRRRIGMIFQH-FNLLSAK-TVFDNVALPLRVAGVPRLQVESRVRELLALVGLADK-- 173 + RR + M+FQ F L+ + T+ + VA + GV + Q R LLA VGL + Sbjct: 104 KEFRRNLQMVFQDSFASLNPRLTISETVAYGPQAHGVSKAQATERAHALLARVGLQPEQF 163 Query: 174 ADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAILQLLREINRKLGIT 233 A YP LSGGQ+QRV IARALA P +++ DEA +ALD +L LL+E+ + +T Sbjct: 164 ASRYPHELSGGQRQRVNIARALAFEPRLVILDEAVAALDKSVQAQVLNLLQELKAEHDLT 223 Query: 234 IILITHEMSVIREIADQVLVLEQGRIAELGQVWEVFGHPRHAATQALLAPLQQGLPPELQ 293 + I+H++ V+ I+D+V+V+ G++ E+G V +++G+ RH T+ALL+ + P Sbjct: 224 YLFISHDLHVVHYISDEVMVMYMGQVVEMGPVEDIYGNSRHPYTRALLSAVPSMDPANRT 283 Query: 294 Q--ALQAQPP 301 Q L PP Sbjct: 284 QHTPLSGDPP 293 >gi|152982345|ref|YP_001352956.1| ABC-type transport system, involved in lipoprotein release, ATPase component [Janthinobacterium sp. Marseille] Length = 228 Score = 153 bits (386), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 80/203 (39%), Positives = 123/203 (60%), Gaps = 1/203 (0%) Query: 42 VALRGVGKTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGR 101 +A R + KT+T V L++++L+I G I+G SG+GKS+LL + L+TP++G Sbjct: 6 LACRNLAKTFTQGKYSVNVLKDVNLDIVKGERVAIVGASGSGKSTLLHLLGGLDTPSAGS 65 Query: 102 VEVDGVDLATLNEGQLVDLRRR-IGMIFQHFNLLSAKTVFDNVALPLRVAGVPRLQVESR 160 V + D ATL+E + DLR + +G ++Q +LL + DNVA+PL + VPR + + Sbjct: 66 VTLLNQDFATLDEKKRGDLRNKSLGFVYQFHHLLPEFSALDNVAMPLMIRRVPRSEAHEK 125 Query: 161 VRELLALVGLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAIL 220 R +LA VGL + P LSGG++QRV +ARAL + P +L DE T LD T H Sbjct: 126 ARAILARVGLEHRVTHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRVTAHKTF 185 Query: 221 QLLREINRKLGITIILITHEMSV 243 L+ E++R LG I++TH++ + Sbjct: 186 DLMLELSRTLGTAFIIVTHDVEL 208 >gi|152980250|ref|YP_001352755.1| macrolide ABC efllux protein [Janthinobacterium sp. Marseille] Length = 657 Score = 150 bits (379), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 112/357 (31%), Positives = 184/357 (51%), Gaps = 35/357 (9%) Query: 42 VALRGVGKTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSGR 101 + LRGV KTY + V+ L IDL+I G I+G SG+GKS+L+ + L+ PT+G Sbjct: 19 IELRGVTKTYRNGGLEVEVLHGIDLKIYEGEFVAIMGASGSGKSTLMNILGCLDRPTTGS 78 Query: 102 VEVDGVDLATLNEGQLVDLRRR-IGMIFQHFNLLSAKTVFDNVALPLRVAGVPRLQVESR 160 G D++ + +L LRR G +FQ +NL+++ + +NV +P +G+P + +R Sbjct: 79 YHFMGRDVSGFDRDELAMLRRDDFGFVFQSYNLIASASAVENVEVPAMYSGLPPAERHAR 138 Query: 161 VRELLALVGLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETTHAIL 220 + LLA +GLA+++ P +LSGGQ+QRV I+RAL +G I+L DE T ALD ++ ++ Sbjct: 139 AQALLAELGLAERSHHRPNQLSGGQQQRVSISRALMNGGRIILADEPTGALDSKSGQDVM 198 Query: 221 QLLREINRKLGITIILITHEMSVIREIADQVLVLEQGRIAEL--GQVWEVFGHPRHAATQ 278 +LL +++ + G T++LITH +E+AD R+ E+ G + G + + TQ Sbjct: 199 KLLADLSAR-GHTVLLITHA----KEVADHA-----QRLIEIKDGHILSDPGPAQQSPTQ 248 Query: 279 A-LLAPLQQGLPPELQQALQAQPPATEHERE--YERVLQL------------QYRGGDGL 323 A + P+ G+ L L+A A R + VL L GDG Sbjct: 249 ATFIRPVVAGVGSRLADMLEAAKMALRSLRANFFRSVLTLLGIVIGVASVIAMLAIGDGA 308 Query: 324 EPDLLRIAQALGGKTRLLQANVERIQGHTQGQLYVALAGVRETPDWQALTQGPQAIA 380 + +++ A+G L++ V +G V D +A+ + P +A Sbjct: 309 KQEVVERISAMGSNLLLVRPGVPNQRGFNSTATLV-------VDDVRAIDELPNVLA 358 >gi|152980415|ref|YP_001352504.1| sulfate transport system ATP-binding protein [Janthinobacterium sp. Marseille] Length = 355 Score = 149 bits (376), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 138/236 (58%), Gaps = 13/236 (5%) Query: 41 SVALRGVGKTYTSSAGPVQALQEIDLEIAPGSIFGIIGRSGAGKSSLLRTINRLETPTSG 100 S+ ++ + K + G AL + L+ G + ++G SG GK++LLR I LE P G Sbjct: 2 SIEVKNIQKQF----GNFVALNNVSLDFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHG 57 Query: 101 RVEVDGVDLATLNEGQLVDLRRRIGMIFQHFNLLSAKTVFDNVALPLRV---AGVP-RLQ 156 +V +DG D + + + R++G +FQH+ L TVF+N+A LRV A P Q Sbjct: 58 QVLLDGEDASARHVRE-----RQVGFVFQHYALFKHMTVFENIAFGLRVRPAATRPSESQ 112 Query: 157 VESRVRELLALVGLADKADTYPRRLSGGQKQRVGIARALASGPEILLCDEATSALDPETT 216 ++ +V +LL LV L AD YP +LSGGQ+QR+ +ARALA P +LL DE ALD + Sbjct: 113 IKEKVTKLLELVQLDWLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVR 172 Query: 217 HAILQLLREINRKLGITIILITHEMSVIREIADQVLVLEQGRIAELGQVWEVFGHP 272 + + LR ++ L +T I +TH+ E+ADQ++++ +G + ++G +V+ +P Sbjct: 173 KELRRWLRRLHDDLHVTSIFVTHDQEEALEVADQIVLMNKGNVEQIGAPKDVYNNP 228 Database: BlastDatabases/707/707 Posted date: Apr 13, 2011 12:58 PM Number of letters in database: 1,221,021 Number of sequences in database: 3697 Lambda K H 0.318 0.135 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3697 Number of Hits to DB: 849,032 Number of extensions: 33567 Number of successful extensions: 329 Number of sequences better than 1.0e-08: 66 Number of HSP's gapped: 238 Number of HSP's successfully gapped: 69 Length of query: 390 Length of database: 1,221,021 Length adjustment: 85 Effective length of query: 305 Effective length of database: 906,776 Effective search space: 276566680 Effective search space used: 276566680 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 130 (54.7 bits)