BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2457.p
         (263 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981351|ref|YP_001352423.1| IclR family transcriptional reg...    75   6e-15
gi|152981479|ref|YP_001355355.1| IclR family transcriptional reg...    74   7e-15
gi|152980799|ref|YP_001354172.1| IclR family transcriptional reg...    62   3e-11

>gi|152981351|ref|YP_001352423.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 258

 Score = 74.7 bits (182), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 65/245 (26%), Positives = 124/245 (50%), Gaps = 11/245 (4%)

Query: 15  QSLEKGLAVLRAFNAQRRTMTLGDVASATGISKSSAQRMVHTLEALGYVCK-HPKTRRYQ 73
           Q +E+ +A+L A       ++L +++S TG+  S+A R+++ L    +V +  P T  Y+
Sbjct: 13  QVIERMVALLDALALYPDPVSLKELSSVTGLHPSTAHRILNDLVIKRFVDRSEPGT--YR 70

Query: 74  LTPKVMEVGYNYLAADILV-DVANPFLSELANITGETVNLTEPYHCEMVYVAR-FVASKF 131
           L  +++E+G N + + + V + A   +  L   T +TVNL+   + E++Y+ R F     
Sbjct: 71  LGMRLLELG-NIVKSRLDVREAALDLMRHLHRKTNQTVNLSVRQNDEIIYIDRAFSERSG 129

Query: 132 IPIHMPIGSRIPMYCTASGRAYLSALSAAEAQTILMASDRVVHTPHTLTEVDDIMQALVA 191
           + +   +G R P++ T++G+ +LS       Q     +    H  +++T++  +   L  
Sbjct: 130 MQVVRAVGGRAPLHLTSTGKLFLSIDEPRMVQAYATRTGLAGHNKNSITDLKKLEGELNQ 189

Query: 192 TRERGFASNREELFLGDMTIASPIFNSERTPVASVHVVAPTSRWTLEDAEKKLGPLVLDC 251
            R  G+A + EEL LG   +A+ I +     +A + + AP  R      E+ L  L +D 
Sbjct: 190 VRLHGYARDNEELELGVRCMAAGIHDDTGRLIAGLSISAPADRLQ----EEWLADL-MDT 244

Query: 252 ARAIS 256
           A+ IS
Sbjct: 245 AKQIS 249


>gi|152981479|ref|YP_001355355.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 257

 Score = 74.3 bits (181), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 65/229 (28%), Positives = 109/229 (47%), Gaps = 5/229 (2%)

Query: 34  MTLGDVASATGISKSSAQRMVHTLEALGYVCKHPKTRRYQLTPKVMEVGYNYLAADILVD 93
           M L D+A    +   +A RM+  L A G + +   ++RY L P + E+G        L D
Sbjct: 31  MRLVDLAREMELEHPTAHRMLKALVAEGMLVQLSGSKRYTLGPVMFELGLAATHQFNLRD 90

Query: 94  VANPFLSELANITGETVNLTEPYHCEMVYVARFVASKFI--PIHMPIGSRIPMYCTASGR 151
           +  P L  LA  TG+T  L      + + ++R   +  I  P+ +P+GSR P+  +A G 
Sbjct: 91  ICAPVLERLAQSTGDTSFLFVRSGNDAICLSRIQGNYPIQTPV-VPVGSRQPLGVSAGGL 149

Query: 152 AYLSALSAAEAQTILMASDRVVHTPHTLTEVDDIMQALVATRERGFASNREELFLGDMTI 211
           A LS L  AEA+ IL   +  +     L +++D++     T E G+A        G   +
Sbjct: 150 ALLSCLPKAEAEQILREVEPRLSVYENL-DINDVIDHYNRTHELGYAWISNHAVPGVSAL 208

Query: 212 ASPIFNSERTPVASVHVVAPTSRWTLEDAEKKLGPLVLDCARAISNSVR 260
             PI N+  T VA++ V    +R T     + L P++ + A+ ++  +R
Sbjct: 209 GLPIRNAAGTAVAAITVATTLARMTATRVNEIL-PILREAAQDVARLLR 256


>gi|152980799|ref|YP_001354172.1| IclR family transcriptional
           regulator [Janthinobacterium sp. Marseille]
          Length = 352

 Score = 62.4 bits (150), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 51/225 (22%), Positives = 102/225 (45%), Gaps = 8/225 (3%)

Query: 15  QSLEKGLAVLRAFNAQRRTMTLGDVASATGISKSSAQRMVHTLEALGYVCKHPKTRRYQL 74
           QS+E G  +L       R + L  +A + G++ ++    + + +A+G + +   +  Y L
Sbjct: 92  QSIEIGFRILDVLRTAGRPLPLRQIAESAGMAVANVHYYLVSFQAVGVIRQEADSGHYGL 151

Query: 75  TPKVMEVGYNYLAADILVDVANPFLSELANITGETVNLTEPYHCEMVYVARFVASKFIPI 134
            P  +++G   L    +   A P ++ELA   G TV L    +     V R       PI
Sbjct: 152 GPYALKLGMAALEQFDVFTAARPVMAELAATVGHTVFLGVWGNRGPTIVYRIEGGTSRPI 211

Query: 135 -HMPIGSRIPMYCTASGRAYLSALSAAEAQTILMASDRV-VHTPHTLTEVD------DIM 186
             + +GS +P+  +A GR +L+ L       +L    ++ +   H  +  D      DI 
Sbjct: 212 LELRVGSVLPLLNSALGRNFLAHLPRTITGELLKQELKINLDDKHAPSHSDLPQSAADIE 271

Query: 187 QALVATRERGFASNREELFLGDMTIASPIFNSERTPVASVHVVAP 231
           + L + +E G +  R+ L     ++++P+F+     +A++ ++ P
Sbjct: 272 KMLASVKENGLSRCRDALLPHFTSLSAPVFDHLGEMIAAITLMGP 316


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.131    0.371 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 537,468
Number of extensions: 19962
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 3
Length of query: 263
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 182
Effective length of database: 921,564
Effective search space: 167724648
Effective search space used: 167724648
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)