BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2456.p
         (255 letters)

Database: BlastDatabases/707/707 
           3697 sequences; 1,221,021 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|152981681|ref|YP_001351726.1| ABC transporter substrate bindi...    67   1e-12

>gi|152981681|ref|YP_001351726.1| ABC transporter substrate binding
           protein [Janthinobacterium sp. Marseille]
          Length = 259

 Score = 66.6 bits (161), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/208 (27%), Positives = 99/208 (47%), Gaps = 22/208 (10%)

Query: 54  QGMMIDTVTAVGSKAGFSVNIQQTPFAALIPSLTGNKIDIIAAAMLKTEARAQIVDFSDP 113
           QG+ ID  T +  K G  V +     A  IP L   K+D++ ++M K   R +++DFS  
Sbjct: 56  QGLDIDVATLIAKKLGVKVELIPVTSANRIPYLQTKKVDLVISSMGKNPEREKVIDFSAA 115

Query: 114 VYSYGEGLFVNAQDQKVYKTLDDLKGEIVGAQVGTVFVDALNKKGGFK-EVKTYDS---- 168
              +  G+F  A DQKV     DL G+ +G   G+V    L+K       +K Y+     
Sbjct: 116 YAPFFNGVFGPA-DQKVAAPA-DLAGKTIGVTRGSVEDLELSKIAPESATIKRYEDNNGT 173

Query: 169 ----VADMMRDVGLGRIKAGFGDRPIVAYQLSQGANAQVRLVKEYQPTLMGDVCLVIRKG 224
               +++ ++ V  G + A      I+A    +    + + + +  P  +G     + KG
Sbjct: 174 ISSFLSNQVQLVATGNVIAAA----IIAKNPPK--KPETKFLIKNSPCSIG-----LNKG 222

Query: 225 DPKLMERLNKAIAELKADGTLARIVEQW 252
           + KL+E++N  IA+ K DG+L  + E+W
Sbjct: 223 EEKLLEKVNAIIAQAKKDGSLNTLTEKW 250


  Database: BlastDatabases/707/707
    Posted date:  Apr 13, 2011 12:58 PM
  Number of letters in database: 1,221,021
  Number of sequences in database:  3697
  
Lambda     K      H
   0.319    0.135    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3697
Number of Hits to DB: 575,009
Number of extensions: 23278
Number of successful extensions: 88
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 89
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 1,221,021
Length adjustment: 81
Effective length of query: 174
Effective length of database: 921,564
Effective search space: 160352136
Effective search space used: 160352136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)